{ "type": "genome", "identifier": "GCF_900111685.1", "organism": "Nonomuraea wenchangensis", "title": "Nonomuraea wenchangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900111685.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421811", "wgs_master": "FOHX00000000.1", "refseq_category": "reference genome", "taxid": "568860", "species_taxid": "568860", "organism_name": "Nonomuraea wenchangensis", "infraspecific_name": "strain=CGMCC 4.5598", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/01", "asm_name": "IMG-taxon 2675903060 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900111685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/111/685/GCF_900111685.1_IMG-taxon_2675903060_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10051191", "genome_size_ungapped": "10048146", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900111685.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "9713", "protein_coding_gene_count": "9543", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-01", "dateModified": "2016-11-01", "datePublished": "2016-11-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Nonomuraea wenchangensis" ], "sample_taxid": [ "568860" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Wenchang, Hainan province" ], "sample_host_location_id": [], "data_size": "2.684 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 7.52, "strain_heterogeneity": 57.14, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10051191", "Number of Sequences": "40", "Longest Sequences (bp)": "909208", "N50 (bp)": "529928", "Gap Ratio (%)": "0.030295", "GCcontent (%)": "71.7", "Number of CDSs": "9696", "Average Protein Length": "316.3", "Coding Ratio (%)": "91.5", "Number of rRNAs": "5", "Number of tRNAs": "83", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea wenchangensis", "strain": "strain=CGMCC 4.5598", 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2495887, "relation_to_type": "type", "validated": true, "ani": 85.3786, "matched_fragments": 2119, "total_fragments": 3331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea turkmeniaca", "strain": "strain=DSM 43926", "accession": "GCA_005889735.1", "taxid": 103838, "species_taxid": 103838, "relation_to_type": "type", "validated": true, "ani": 85.2005, "matched_fragments": 2009, "total_fragments": 3331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea polychroma", "strain": "strain=DSM 43925", "accession": "GCA_004011505.1", "taxid": 46176, "species_taxid": 46176, "relation_to_type": "type", "validated": true, "ani": 85.161, "matched_fragments": 2123, "total_fragments": 3331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rubra", "strain": "strain=DSM 43768", "accession": "GCA_014207985.1", "taxid": 46180, "species_taxid": 46180, "relation_to_type": "type", "validated": true, "ani": 85.0486, "matched_fragments": 2282, "total_fragments": 3331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=WYY166", "accession": "GCA_009497075.1", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 84.8918, "matched_fragments": 2136, "total_fragments": 3331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=PA1-10", "accession": "GCA_006334985.2", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 84.8901, "matched_fragments": 2119, "total_fragments": 3331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea angiospora", "strain": "strain=DSM 43173", "accession": "GCA_014873145.1", "taxid": 46172, "species_taxid": 46172, "relation_to_type": "type", "validated": true, "ani": 84.8102, "matched_fragments": 2284, "total_fragments": 3331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aridisoli", "strain": "strain=KC333", "accession": "GCA_003236395.1", "taxid": 2070368, "species_taxid": 2070368, "relation_to_type": "type", "validated": true, "ani": 84.7637, "matched_fragments": 1858, "total_fragments": 3331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea jabiensis", "strain": "strain=DSM 45507", "accession": "GCA_014204795.1", "taxid": 882448, "species_taxid": 882448, "relation_to_type": "type", "validated": true, "ani": 84.731, "matched_fragments": 2276, "total_fragments": 3331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea diastatica", "strain": "strain=KC712", "accession": "GCA_004349015.1", "taxid": 1848329, "species_taxid": 1848329, "relation_to_type": "type", "validated": true, "ani": 84.2934, "matched_fragments": 1901, "total_fragments": 3331, "ani_threshold": 95, "status": "below_threshold" }, { 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