{ "type": "genome", "identifier": "GCF_900111735.1", "organism": "Pseudomonas graminis", "title": "Pseudomonas graminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900111735.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216197", "wgs_master": "FOHW00000000.1", "refseq_category": "reference genome", "taxid": "158627", "species_taxid": "158627", "organism_name": "Pseudomonas graminis", "infraspecific_name": "strain=DSM 11363", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/31", "asm_name": "IMG-taxon 2671180035 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900111735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/111/735/GCF_900111735.1_IMG-taxon_2671180035_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5852045", "genome_size_ungapped": "5845484", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "98", "contig_count": "98", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900111735.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "5277", "protein_coding_gene_count": "5123", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-31", "dateModified": "2016-10-31", "datePublished": "2016-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas graminis" ], "sample_taxid": [ "158627" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.646 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5852045", "Number of Sequences": "98", "Longest Sequences (bp)": "398862", "N50 (bp)": "130494", "Gap Ratio (%)": "0.112115", "GCcontent (%)": "60.3", "Number of CDSs": "5227", "Average Protein Length": "318.1", "Coding Ratio (%)": "85.2", "Number of rRNAs": "5", "Number of tRNAs": "54", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas graminis", "strain": "strain=DSM 11363", "accession": "GCA_900111735.1", "taxid": 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587753, "relation_to_type": "type", "validated": true, "ani": 81.3598, "matched_fragments": 958, "total_fragments": 1899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens", "strain": "strain=LMG 1245", "accession": "GCA_001269575.1", "taxid": 587851, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 81.3395, "matched_fragments": 954, "total_fragments": 1899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens", "strain": "strain=DSM 6698", "accession": "GCA_003851905.1", "taxid": 587851, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 81.3233, "matched_fragments": 971, "total_fragments": 1899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens", "strain": "strain=NBRC 3521", "accession": "GCA_000813225.1", "taxid": 587851, 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