{ "type": "genome", "identifier": "GCF_900111775.1", "organism": "Desulfuromonas acetexigens", "title": "Desulfuromonas acetexigens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "AALBORG UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900111775.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4526271", "wgs_master": "FOJJ00000000.1", "refseq_category": "reference genome", "taxid": "38815", "species_taxid": "38815", "organism_name": "Desulfuromonas acetexigens", "infraspecific_name": "na", "isolate": "DSM 1397", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "ASM90011177v1", "asm_submitter": "AALBORG UNIVERSITY", "gbrs_paired_asm": "GCA_900111775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/111/775/GCF_900111775.1_ASM90011177v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3683125", "genome_size_ungapped": "3683125", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900111775.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "3460", "protein_coding_gene_count": "3382", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfuromonas acetexigens" ], "sample_taxid": [ "38815" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.032 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3683125", "Number of Sequences": "41", "Longest Sequences (bp)": "587354", "N50 (bp)": "301105", "Gap Ratio (%)": "0.000244", "GCcontent (%)": "60.3", "Number of CDSs": "3426", "Average Protein Length": "321.7", "Coding Ratio (%)": "89.8", "Number of rRNAs": "6", "Number of tRNAs": "57", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfuromonas acetexigens", "strain": "strain=2873", "accession": "GCA_007051125.1", "taxid": 38815, "species_taxid": 38815, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1205, "total_fragments": 1207, "ani_threshold": 95, 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