{ "type": "genome", "identifier": "GCF_900111985.1", "organism": "Clostridium frigidicarnis", "title": "Clostridium frigidicarnis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900111985.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488528", "wgs_master": "FOKI00000000.1", "refseq_category": "reference genome", "taxid": "84698", "species_taxid": "84698", "organism_name": "Clostridium frigidicarnis", "infraspecific_name": "strain=DSM 12271", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2634166358 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900111985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/111/985/GCF_900111985.1_IMG-taxon_2634166358_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4337414", "genome_size_ungapped": "4334934", "gc_percent": "28.500000", "replicon_count": "0", "scaffold_count": "112", "contig_count": "112", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900111985.1-RS_2024_04_12", "annotation_date": "2024-04-12", "total_gene_count": "3985", "protein_coding_gene_count": "3859", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium frigidicarnis" ], "sample_taxid": [ "84698" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.181 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4337414", "Number of Sequences": "112", "Longest Sequences (bp)": "234438", "N50 (bp)": "109848", "Gap Ratio (%)": "0.057177", "GCcontent (%)": "28.5", "Number of CDSs": "3852", "Average Protein Length": "300.5", "Coding Ratio (%)": "80.1", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium frigidicarnis", "strain": "strain=DSM 12271", "accession": "GCA_900111985.1", "taxid": 84698, 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"strain": "strain=NCTC9836", "accession": "GCA_900461105.1", "taxid": 99675, "species_taxid": 99675, "relation_to_type": "type", "validated": true, "ani": 76.6762, "matched_fragments": 183, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium amylolyticum", "strain": "strain=DSM 21864", "accession": "GCA_900142075.1", "taxid": 1121298, "species_taxid": 1121298, "relation_to_type": "type", "validated": true, "ani": 76.6706, "matched_fragments": 153, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium perfringens", "strain": "strain=FDAARGOS_903", "accession": "GCA_016027375.1", "taxid": 1502, "species_taxid": 1502, "relation_to_type": "type", "validated": true, "ani": 76.6458, "matched_fragments": 191, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desnuesiella massiliensis", "strain": "strain=mt10", "accession": "GCA_001403615.1", "taxid": 1650662, "species_taxid": 1650662, "relation_to_type": "type", "validated": true, "ani": 76.6186, "matched_fragments": 219, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium manihotivorum", "strain": "strain=CT4", "accession": "GCA_004015185.1", "taxid": 2320868, "species_taxid": 2320868, "relation_to_type": "type", "validated": true, "ani": 76.6014, "matched_fragments": 156, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium moniliforme", "strain": "strain=DSM 3984", "accession": "GCA_017873235.1", "taxid": 39489, "species_taxid": 39489, "relation_to_type": "type", "validated": true, "ani": 76.5777, "matched_fragments": 230, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium perfringens", "strain": "strain=ATCC 13124", "accession": "GCA_000013285.1", "taxid": 1502, "species_taxid": 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76.1837, "matched_fragments": 165, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium prolinivorans", "strain": "strain=PYR-10", "accession": "GCA_004011155.1", "taxid": 2769420, "species_taxid": 2769420, "relation_to_type": "type", "validated": true, "ani": 75.9716, "matched_fragments": 152, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporosalibacterium faouarense", "strain": "strain=SOL3f37", "accession": "GCA_016765695.1", "taxid": 516123, "species_taxid": 516123, "relation_to_type": "type", "validated": true, "ani": 75.0129, "matched_fragments": 68, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900111985.1", "gtdb_species": "s__Clostridium_Z frigidicarnis", "ani": 100.0, "matched_fragments": 1385, 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