{
    "type": "genome",
    "identifier": "GCF_900112145.1",
    "organism": "Kosakonia oryzae",
    "title": "Kosakonia oryzae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900112145.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216286",
        "wgs_master": "FOKO00000000.1",
        "refseq_category": "na",
        "taxid": "497725",
        "species_taxid": "497725",
        "organism_name": "Kosakonia oryzae",
        "infraspecific_name": "strain=CGMCC 1.7012",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/02",
        "asm_name": "IMG-taxon 2675902965 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900112145.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/145/GCF_900112145.1_IMG-taxon_2675902965_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5380462",
        "genome_size_ungapped": "5375985",
        "gc_percent": "54.000000",
        "replicon_count": "0",
        "scaffold_count": "15",
        "contig_count": "15",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900112145.1-RS_2024_12_23",
        "annotation_date": "2024-12-23",
        "total_gene_count": "5132",
        "protein_coding_gene_count": "4981",
        "non_coding_gene_count": "89",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-02",
    "dateModified": "2016-11-02",
    "datePublished": "2016-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kosakonia oryzae"
        ],
        "sample_taxid": [
            "497725"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.519 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5380462",
        "Number of Sequences": "15",
        "Longest Sequences (bp)": "1044565",
        "N50 (bp)": "941950",
        "Gap Ratio (%)": "0.083208",
        "GCcontent (%)": "54.0",
        "Number of CDSs": "5008",
        "Average Protein Length": "316.4",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "5",
        "Number of tRNAs": "70",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Kosakonia oryzae",
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                "accession": "GCA_900112145.1",
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                "species_taxid": 497725,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1786,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Kosakonia oryzae",
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                "accession": "GCA_001658025.2",
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                "species_taxid": 497725,
                "relation_to_type": "type",
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            },
            {
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                "species_taxid": 1005667,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Kosakonia arachidis",
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                "species_taxid": 551989,
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                "validated": true,
                "ani": 92.5984,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kosakonia sacchari",
                "strain": "strain=SP1",
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                "species_taxid": 1158459,
                "relation_to_type": "type",
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                "ani": 85.0572,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kosakonia sacchari",
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                "accession": "GCA_900100995.1",
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                "relation_to_type": "type",
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                "ani": 85.0237,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kosakonia oryzendophytica",
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                "accession": "GCA_900094925.1",
                "taxid": 1005665,
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                "matched_fragments": 1246,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kosakonia cowanii",
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                "species_taxid": 208223,
                "relation_to_type": "type",
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                "matched_fragments": 1140,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4693,
                "matched_fragments": 915,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
                "strain": "strain=DSM 16690",
                "accession": "GCA_024390995.1",
                "taxid": 1812935,
                "species_taxid": 1812935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4343,
                "matched_fragments": 890,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter hormaechei",
                "strain": "strain=FDAARGOS 1433",
                "accession": "GCA_019048245.1",
                "taxid": 158836,
                "species_taxid": 158836,
                "relation_to_type": "suspected-type",
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                "ani": 81.3927,
                "matched_fragments": 908,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter cloacae",
                "strain": "strain=DSM 30054",
                "accession": "GCA_021469225.1",
                "taxid": 550,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3236,
                "matched_fragments": 905,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter sichuanensis",
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                "accession": "GCA_025002605.1",
                "taxid": 2071710,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_001658025.2",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kosakonia",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "oryzae"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}