{ "type": "genome", "identifier": "GCF_900112205.1", "organism": "Halobiforma haloterrestris", "title": "Halobiforma haloterrestris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900112205.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444422", "wgs_master": "FOKW00000000.1", "refseq_category": "reference genome", "taxid": "148448", "species_taxid": "148448", "organism_name": "Halobiforma haloterrestris", "infraspecific_name": "strain=DSM 13078", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2693429869 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900112205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/205/GCF_900112205.1_IMG-taxon_2693429869_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "4495442", "genome_size_ungapped": "4495104", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900112205.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4383", "protein_coding_gene_count": "4245", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Halobiforma haloterrestris" ], "sample_taxid": [ "148448" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.227 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4495442", "Number of Sequences": "31", "Longest Sequences (bp)": "840660", "N50 (bp)": "375716", "Gap Ratio (%)": "0.007519", "GCcontent (%)": "65.4", "Number of CDSs": "4315", "Average Protein Length": "298.0", "Coding Ratio (%)": "85.8", "Number of rRNAs": "3", "Number of tRNAs": "61", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halobiforma haloterrestris", "strain": "strain=DSM 13078", "accession": "GCA_900112205.1", 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"min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900110455.1", "gtdb_species": "s__Natrinema salifodinae", "ani": 81.3829, "matched_fragments": 754, "total_fragments": 1484, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.301, "doubling_h": null, "growth_tmp": 42.0, "optimum_tmp": 42.0, "optimum_ph": 7.5, "genome_size": 4495442.0, "gc_content": 60.992, "coding_genes": 4092.5, "rRNA16S_genes": 3.0, "tRNA_genes": 48.0, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, 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