{
    "type": "genome",
    "identifier": "GCF_900112235.1",
    "organism": "Marinospirillum celere",
    "title": "Marinospirillum celere",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900112235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05660443",
        "wgs_master": "FOLH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1122252",
        "species_taxid": "1122252",
        "organism_name": "Marinospirillum celere",
        "infraspecific_name": "strain=DSM 18438",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/02",
        "asm_name": "IMG-taxon 2600254929 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900112235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/235/GCF_900112235.1_IMG-taxon_2600254929_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3083561",
        "genome_size_ungapped": "3083551",
        "gc_percent": "50.500000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "12",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900112235.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "2913",
        "protein_coding_gene_count": "2842",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-02",
    "dateModified": "2016-11-02",
    "datePublished": "2016-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Marinospirillum celere DSM 18438"
        ],
        "sample_taxid": [
            "497722"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Paoha island, Mono lake, California"
        ],
        "sample_host_location_id": [],
        "data_size": "0.875 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3083561",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "933711",
        "N50 (bp)": "535297",
        "Gap Ratio (%)": "0.000324",
        "GCcontent (%)": "50.4",
        "Number of CDSs": "2855",
        "Average Protein Length": "330.8",
        "Coding Ratio (%)": "91.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Marinospirillum celere",
                "strain": "strain=DSM 18438",
                "accession": "GCA_900112235.1",
                "taxid": 1122252,
                "species_taxid": 1122252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1022,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Marinospirillum perlucidum",
                "strain": "strain=F3212",
                "accession": "GCA_003336805.1",
                "taxid": 1982602,
                "species_taxid": 1982602,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2926,
                "matched_fragments": 328,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinospirillum alkaliphilum",
                "strain": "strain=DSM 21637",
                "accession": "GCA_900119735.1",
                "taxid": 148454,
                "species_taxid": 148454,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3515,
                "matched_fragments": 278,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinospirillum minutulum",
                "strain": "strain=DSM 6287",
                "accession": "GCA_000422325.1",
                "taxid": 64974,
                "species_taxid": 64974,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6763,
                "matched_fragments": 97,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinospirillum insulare",
                "strain": "strain=DSM 21763",
                "accession": "GCA_000686905.1",
                "taxid": 217169,
                "species_taxid": 217169,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1896,
                "matched_fragments": 96,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Terasakiispira papahanaumokuakeensis",
                "strain": "strain=PH27A",
                "accession": "GCA_001709345.1",
                "taxid": 197479,
                "species_taxid": 197479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9677,
                "matched_fragments": 64,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanospirillum linum",
                "strain": "strain=ATCC 11336",
                "accession": "GCA_001995095.2",
                "taxid": 966,
                "species_taxid": 966,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5356,
                "matched_fragments": 61,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900112235.1",
                "gtdb_species": "s__Marinospirillum celere",
                "ani": 100.0,
                "matched_fragments": 1022,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003336805.1",
                "gtdb_species": "s__Marinospirillum perlucidum",
                "ani": 79.3072,
                "matched_fragments": 327,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900119735.1",
                "gtdb_species": "s__Marinospirillum alkaliphilum",
                "ani": 78.3652,
                "matched_fragments": 277,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007116195.1",
                "gtdb_species": "s__Marinospirillum sp007116195",
                "ani": 78.1629,
                "matched_fragments": 135,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007116865.1",
                "gtdb_species": "s__Marinospirillum sp007116865",
                "ani": 77.9771,
                "matched_fragments": 112,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014859565.1",
                "gtdb_species": "s__Marinospirillum sp014859565",
                "ani": 77.8348,
                "matched_fragments": 241,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007119985.1",
                "gtdb_species": "s__Marinospirillum sp007119985",
                "ani": 77.4834,
                "matched_fragments": 127,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000686905.1",
                "gtdb_species": "s__Marinospirillum insulare",
                "ani": 77.187,
                "matched_fragments": 98,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012727935.1",
                "gtdb_species": "s__Marinospirillum sp012727935",
                "ani": 77.1224,
                "matched_fragments": 70,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Marinospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014164585.1",
                "gtdb_species": "s__Oceanospirillum sp014164585",
                "ani": 76.6863,
                "matched_fragments": 57,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Oceanospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002813215.1",
                "gtdb_species": "s__Halomonas sp002813215",
                "ani": 76.6491,
                "matched_fragments": 64,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.58,
        "cell_length": 0.457,
        "doubling_h": null,
        "growth_tmp": 26.5,
        "optimum_tmp": 32.25,
        "optimum_ph": 8.0,
        "genome_size": 2965402.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 1.0
    },
    "_genome_taxon": [
        "Marinospirillum",
        "celere"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}