{ "type": "genome", "identifier": "GCF_900112245.1", "organism": "Maribacter stanieri", "title": "Maribacter stanieri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900112245.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488010", "wgs_master": "FOYX00000000.1", "refseq_category": "reference genome", "taxid": "440514", "species_taxid": "440514", "organism_name": "Maribacter stanieri", "infraspecific_name": "strain=DSM 19891", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2622736542 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900112245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/245/GCF_900112245.1_IMG-taxon_2622736542_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4460741", "genome_size_ungapped": "4458637", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900112245.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3878", "protein_coding_gene_count": "3819", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Maribacter stanieri" ], "sample_taxid": [ "440514" ], "sample_host_organism": 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"organism_name": "Muricauda hymeniacidonis", "strain": "strain=176CP4-71", "accession": "GCA_004296335.1", "taxid": 2517819, "species_taxid": 2517819, "relation_to_type": "type", "validated": true, "ani": 76.2165, "matched_fragments": 73, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 76.1885, "matched_fragments": 127, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 76.1623, "matched_fragments": 156, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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79.7877, "matched_fragments": 582, "total_fragments": 1482, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.456, "cell_length": 0.494, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 25.5, "optimum_ph": 7.25, "genome_size": 4460741.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, 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