{ "type": "genome", "identifier": "GCF_900112265.1", "organism": "Pseudoalteromonas denitrificans DSM 6059", "title": "Pseudoalteromonas denitrificans DSM 6059", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900112265.1", "bioproject": "PRJNA224116", "biosample": "SAMN02745724", "wgs_master": "FOLO00000000.1", "refseq_category": "reference genome", "taxid": "1123010", "species_taxid": "43656", "organism_name": "Pseudoalteromonas denitrificans DSM 6059", "infraspecific_name": "strain=DSM 6059", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/05", "asm_name": "IMG-taxon 2599185267 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900112265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/265/GCF_900112265.1_IMG-taxon_2599185267_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6094166", "genome_size_ungapped": "6081719", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "130", "contig_count": "130", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900112265.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "5422", "protein_coding_gene_count": "5258", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-05", "dateModified": "2016-11-05", "datePublished": "2016-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas denitrificans DSM 6059" ], "sample_taxid": [ "1123010" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Norway:Fjord system off the Norwegian west coast" ], "sample_host_location_id": [], "data_size": "1.714 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6094166", "Number of Sequences": "130", "Longest Sequences (bp)": "364194", "N50 (bp)": "85093", "Gap Ratio (%)": "0.204245", "GCcontent (%)": "34.7", "Number of CDSs": "5270", "Average Protein Length": "333.0", "Coding Ratio (%)": "86.4", "Number of rRNAs": "6", "Number of tRNAs": "68", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas denitrificans", "strain": "strain=DSM 6059", 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"species_taxid": 1774956, "relation_to_type": "type", "validated": true, "ani": 77.5545, "matched_fragments": 174, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KCTC 12958", "accession": "GCA_001455325.1", "taxid": 152297, "species_taxid": 152297, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5147, "matched_fragments": 184, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KMM 3549", "accession": "GCA_002310795.1", "taxid": 152297, "species_taxid": 152297, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5142, "matched_fragments": 182, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=IAM 12662", "accession": "GCA_014925295.1", "taxid": 227, 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"relation_to_type": "type", "validated": true, "ani": 77.3976, "matched_fragments": 202, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas galatheae", "strain": "strain=S4498", "accession": "GCA_005886105.2", "taxid": 579562, "species_taxid": 579562, "relation_to_type": "type", "validated": true, "ani": 77.3315, "matched_fragments": 109, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas lipolytica", "strain": "strain=CGMCC 1.8499", "accession": "GCA_900116435.1", "taxid": 570156, "species_taxid": 570156, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3307, "matched_fragments": 173, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=NBRC 12985", "accession": "GCA_006539245.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", 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77.2464, "matched_fragments": 186, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas neustonica", "strain": "strain=PAMC 28425", "accession": "GCA_001653135.1", "taxid": 1840331, "species_taxid": 1840331, "relation_to_type": "type", "validated": true, "ani": 77.2412, "matched_fragments": 213, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas marina", "strain": "strain=DSM 17587", "accession": "GCA_000238335.4", "taxid": 267375, "species_taxid": 267375, "relation_to_type": "type", "validated": true, "ani": 77.238, "matched_fragments": 179, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas prydzensis", "strain": "strain=DSM 14232", "accession": "GCA_001661495.1", "taxid": 182141, "species_taxid": 182141, "relation_to_type": "type", "validated": true, "ani": 77.1491, "matched_fragments": 199, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas ostreae", "strain": "strain=hOe-66", "accession": "GCA_018069805.1", "taxid": 2774154, "species_taxid": 2774154, "relation_to_type": "type", "validated": true, "ani": 77.0896, "matched_fragments": 199, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas spongiae", "strain": "strain=UST010723-006", "accession": "GCA_000238255.4", "taxid": 298657, "species_taxid": 298657, "relation_to_type": "type", "validated": true, "ani": 76.9032, "matched_fragments": 180, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia piezophila", "strain": "strain=ATCC BAA-637", "accession": "GCA_000378625.1", "taxid": 211668, "species_taxid": 211668, "relation_to_type": "type", "validated": true, "ani": 76.4972, "matched_fragments": 130, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moritella dasanensis", "strain": "strain=ArB 0140", "accession": "GCA_000276805.1", "taxid": 428031, "species_taxid": 428031, "relation_to_type": "type", "validated": true, "ani": 76.4574, "matched_fragments": 63, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrosphaera ytuae", "strain": "strain=MTZ26", "accession": "GCA_017638545.1", "taxid": 2820710, "species_taxid": 2820710, "relation_to_type": "type", "validated": true, "ani": 76.4018, "matched_fragments": 63, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flocculibacter collagenilyticus", "strain": "strain=SM1988", "accession": "GCA_016469335.1", "taxid": 2744479, "species_taxid": 2744479, "relation_to_type": "type", "validated": true, "ani": 76.2092, "matched_fragments": 108, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Moritella yayanosii", "strain": "strain=DB21MT 5", "accession": "GCA_900465055.1", "taxid": 69539, "species_taxid": 69539, "relation_to_type": "type", "validated": true, "ani": 76.2047, "matched_fragments": 64, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella olleyana", "strain": "strain=LMG 21437", "accession": "GCA_023283825.1", "taxid": 135626, "species_taxid": 135626, "relation_to_type": "type", "validated": true, "ani": 75.9781, "matched_fragments": 76, "total_fragments": 1962, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900112265.1", "gtdb_species": "s__Pseudoalteromonas denitrificans", "ani": 100.0, "matched_fragments": 1953, "total_fragments": 1962, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", 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