{ "type": "genome", "identifier": "GCF_900112305.1", "organism": "Microbulbifer thermotolerans", "title": "Microbulbifer thermotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900112305.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660479", "wgs_master": "FOKT00000000.1", "refseq_category": "na", "taxid": "252514", "species_taxid": "252514", "organism_name": "Microbulbifer thermotolerans", "infraspecific_name": "strain=DSM 19189", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2599185213 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900112305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/305/GCF_900112305.1_IMG-taxon_2599185213_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3925814", "genome_size_ungapped": "3923753", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900112305.1-RS_2024_07_25", "annotation_date": "2024-07-25", "total_gene_count": "3395", "protein_coding_gene_count": "3299", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbulbifer thermotolerans" ], "sample_taxid": [ "252514" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Suruga Bay" ], "sample_host_location_id": [], "data_size": "1.115 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3925814", "Number of Sequences": "30", "Longest Sequences (bp)": "584162", "N50 (bp)": "434520", "Gap Ratio (%)": "0.052499", "GCcontent (%)": "56.5", "Number of CDSs": "3381", "Average Protein Length": "333.1", "Coding Ratio (%)": "86.1", "Number of rRNAs": "5", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microbulbifer thermotolerans", "strain": "strain=DSM 19189", "accession": "GCA_900112305.1", "taxid": 252514, "species_taxid": 252514, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1292, "total_fragments": 1292, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microbulbifer taiwanensis", "strain": "strain=LMG 26125", "accession": "GCA_014904815.1", "taxid": 986746, "species_taxid": 986746, "relation_to_type": "type", "validated": true, "ani": 80.3221, "matched_fragments": 658, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer marinus", "strain": "strain=CGMCC 1.10657", "accession": "GCA_900107725.1", "taxid": 658218, "species_taxid": 658218, "relation_to_type": "type", "validated": true, "ani": 79.7245, "matched_fragments": 586, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer donghaiensis", "strain": "strain=CGMCC 1.7063", "accession": "GCA_900129095.1", "taxid": 494016, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halioglobus japonicus", "strain": "strain=NBRC 107739", "accession": "GCA_001983995.1", "taxid": 930805, "species_taxid": 930805, "relation_to_type": "type", "validated": true, "ani": 76.35, "matched_fragments": 68, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 76.1472, "matched_fragments": 103, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 76.1385, "matched_fragments": 85, "total_fragments": 1292, "ani_threshold": 95, "status": "below_threshold" } ], 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