{ "type": "genome", "identifier": "GCF_900112345.1", "organism": "Nocardioides terrae", "title": "Nocardioides terrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900112345.1", "bioproject": "PRJNA224116", "biosample": "SAMN04487968", "wgs_master": "FOLB00000000.1", "refseq_category": "reference genome", "taxid": "574651", "species_taxid": "574651", "organism_name": "Nocardioides terrae", "infraspecific_name": "strain=CGMCC 1.7056", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2617270786 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900112345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/345/GCF_900112345.1_IMG-taxon_2617270786_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3921832", "genome_size_ungapped": "3921515", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900112345.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3770", "protein_coding_gene_count": "3693", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides terrae" ], "sample_taxid": [ "574651" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.041 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3921832", "Number of Sequences": "36", "Longest Sequences (bp)": "578306", "N50 (bp)": "293240", "Gap Ratio (%)": "0.008083", "GCcontent (%)": "71.5", "Number of CDSs": "3718", "Average Protein Length": "326.7", "Coding Ratio (%)": "92.9", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides terrae", "strain": "strain=CGMCC 1.7056", "accession": "GCA_900112345.1", "taxid": 574651, "species_taxid": 574651, 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615, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 80.3886, "matched_fragments": 644, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luteus", "strain": "strain=JCM 3358", "accession": "GCA_014648595.1", "taxid": 1844, "species_taxid": 1844, "relation_to_type": "type", "validated": true, "ani": 80.3492, "matched_fragments": 638, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides szechwanensis", "strain": "strain=NBRC 108562", "accession": "GCA_007992395.1", "taxid": 1005944, "species_taxid": 1005944, "relation_to_type": "type", "validated": true, "ani": 80.3392, "matched_fragments": 635, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lijunqiniae", "strain": "strain=S-531", "accession": "GCA_015024225.1", "taxid": 2760832, "species_taxid": 2760832, "relation_to_type": "type", "validated": true, "ani": 80.3187, "matched_fragments": 675, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides szechwanensis", "strain": "strain=CGMCC 1.11147", "accession": "GCA_900103935.1", "taxid": 1005944, "species_taxid": 1005944, "relation_to_type": "type", "validated": true, "ani": 80.3077, "matched_fragments": 637, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pimelobacter simplex", "strain": "strain=ATCC 6946", "accession": "GCA_900114845.1", "taxid": 2045, "species_taxid": 2045, "relation_to_type": "type", "validated": true, "ani": 80.2676, "matched_fragments": 684, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides nitrophenolicus", "strain": "strain=DSM 15529", "accession": "GCA_016907515.1", "taxid": 60489, "species_taxid": 60489, "relation_to_type": "type", "validated": true, "ani": 80.2597, "matched_fragments": 700, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides caeni", "strain": "strain=DSM 23134", "accession": "GCA_004912195.1", "taxid": 574700, "species_taxid": 574700, "relation_to_type": "type", "validated": true, "ani": 80.2319, "matched_fragments": 555, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pimelobacter simplex", "strain": "strain=NBRC 12069", "accession": "GCA_006538965.1", "taxid": 2045, "species_taxid": 2045, "relation_to_type": "type", "validated": true, "ani": 80.2269, "matched_fragments": 681, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides baculatus", "strain": "strain=G10", "accession": "GCA_016735675.1", "taxid": 2801337, "species_taxid": 2801337, "relation_to_type": "type", "validated": true, "ani": 80.1907, "matched_fragments": 631, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides gansuensis", "strain": "strain=WSJ-1", "accession": "GCA_003076135.1", "taxid": 2138300, "species_taxid": 2138300, "relation_to_type": "type", "validated": true, "ani": 80.1747, "matched_fragments": 602, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides albertanoniae", "strain": "strain=DSM 25218", "accession": "GCA_006716315.1", "taxid": 1175486, "species_taxid": 1175486, "relation_to_type": "type", "validated": true, "ani": 80.1559, "matched_fragments": 622, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides terrigena", "strain": "strain=KCTC 19217", "accession": "GCA_003047265.1", 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79.88, "matched_fragments": 483, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sambongensis", "strain": "strain=KUDC 5002", "accession": "GCA_006494815.1", "taxid": 2589074, "species_taxid": 2589074, "relation_to_type": "type", "validated": true, "ani": 79.8052, "matched_fragments": 569, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides alkalitolerans", "strain": "strain=DSM 16699", "accession": "GCA_000426525.1", "taxid": 281714, "species_taxid": 281714, "relation_to_type": "type", "validated": true, "ani": 79.6721, "matched_fragments": 563, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900112345.1", "gtdb_species": "s__Nocardioides terrae", "ani": 100.0, "matched_fragments": 1287, "total_fragments": 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