{ "type": "genome", "identifier": "GCF_900112365.1", "organism": "Spirosoma endophyticum", "title": "Spirosoma endophyticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900112365.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216167", "wgs_master": "FOLQ00000000.1", "refseq_category": "reference genome", "taxid": "662367", "species_taxid": "662367", "organism_name": "Spirosoma endophyticum", "infraspecific_name": "strain=DSM 26130", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/05", "asm_name": "IMG-taxon 2622736583 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900112365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/365/GCF_900112365.1_IMG-taxon_2622736583_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8512335", "genome_size_ungapped": "8511704", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "83", "contig_count": "83", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900112365.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "7436", "protein_coding_gene_count": "7323", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-05", "dateModified": "2016-11-05", "datePublished": "2016-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma endophyticum" ], "sample_taxid": [ "662367" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.435 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8512335", "Number of Sequences": "83", "Longest Sequences (bp)": "1263030", "N50 (bp)": "394884", "Gap Ratio (%)": "0.007413", "GCcontent (%)": "48.0", "Number of CDSs": "7127", "Average Protein Length": "336.5", "Coding Ratio (%)": "84.5", "Number of rRNAs": "1", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma endophyticum", "strain": "strain=DSM 26130", "accession": "GCA_900112365.1", 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"below_threshold" }, { "organism_name": "Spirosoma montaniterrae", "strain": "strain=DY10", "accession": "GCA_001988955.1", "taxid": 1178516, "species_taxid": 1178516, "relation_to_type": "type", "validated": true, "ani": 76.8097, "matched_fragments": 360, "total_fragments": 2799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrisoma limi", "strain": "strain=BUZ 3", "accession": "GCA_000296815.2", "taxid": 663275, "species_taxid": 663275, "relation_to_type": "type", "validated": true, "ani": 76.665, "matched_fragments": 308, "total_fragments": 2799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rudanella paleaurantiibacter", "strain": "strain=HX-22-17", "accession": "GCA_009184635.1", "taxid": 2614655, "species_taxid": 2614655, "relation_to_type": "type", "validated": true, "ani": 76.3975, "matched_fragments": 183, "total_fragments": 2799, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella humicola", 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