{
    "type": "genome",
    "identifier": "GCF_900112475.1",
    "organism": "Pragia fontium DSM 5563 = ATCC 49100",
    "title": "Pragia fontium DSM 5563 = ATCC 49100",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900112475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02745723",
        "wgs_master": "FOLW00000000.1",
        "refseq_category": "na",
        "taxid": "1122977",
        "species_taxid": "82985",
        "organism_name": "Pragia fontium DSM 5563 = ATCC 49100",
        "infraspecific_name": "strain=DSM 5563",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/02",
        "asm_name": "IMG-taxon 2602042030 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900112475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/475/GCF_900112475.1_IMG-taxon_2602042030_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3950845",
        "genome_size_ungapped": "3945788",
        "gc_percent": "45.500000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900112475.1-RS_2024_07_25",
        "annotation_date": "2024-07-25",
        "total_gene_count": "3438",
        "protein_coding_gene_count": "3335",
        "non_coding_gene_count": "71",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-02",
    "dateModified": "2016-11-02",
    "datePublished": "2016-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pragia fontium DSM 5563 = ATCC 49100"
        ],
        "sample_taxid": [
            "1122977"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic:Frydek-Mistek"
        ],
        "sample_host_location_id": [],
        "data_size": "1.122 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3950845",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "752404",
        "N50 (bp)": "283612",
        "Gap Ratio (%)": "0.127998",
        "GCcontent (%)": "45.3",
        "Number of CDSs": "3329",
        "Average Protein Length": "334.0",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
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                "matched_fragments": 1298,
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            },
            {
                "organism_name": "Pragia fontium",
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                "accession": "GCA_004959795.1",
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                "relation_to_type": "type",
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            },
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                "organism_name": "Jinshanibacter allomyrinae",
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                "species_taxid": 2791986,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Jinshanibacter zhutongyuii",
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                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Budvicia aquatica",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Budvicia aquatica",
                "strain": "strain=NCTC12282",
                "accession": "GCA_900706715.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Budvicia diplopodorum",
                "strain": "strain=D9",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leminorella grimontii",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Enterobacter sichuanensis",
                "strain": "strain=WCHECL1597",
                "accession": "GCA_025002605.1",
                "taxid": 2071710,
                "species_taxid": 2071710,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 118,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
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                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citrobacter rodentium",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salmonella enterica subsp. enterica",
                "strain": "strain=PartC-Senterica-RM8376",
                "accession": "GCA_022869965.1",
                "taxid": 59201,
                "species_taxid": 28901,
                "relation_to_type": "suspected-type",
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                "ani": 77.2151,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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                "accession": "GCF_900112475.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pragia",
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            {
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            },
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "5563",
        "=",
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        "49100"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}