{ "type": "genome", "identifier": "GCF_900112545.1", "organism": "Pseudooceanicola nitratireducens", "title": "Pseudooceanicola nitratireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900112545.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421762", "wgs_master": "FOLX00000000.1", "refseq_category": "na", "taxid": "517719", "species_taxid": "517719", "organism_name": "Pseudooceanicola nitratireducens", "infraspecific_name": "strain=DSM 29619", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2687453758 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900112545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/545/GCF_900112545.1_IMG-taxon_2687453758_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4068972", "genome_size_ungapped": "4068274", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900112545.1-RS_2024_04_24", "annotation_date": "2024-04-24", "total_gene_count": "3912", "protein_coding_gene_count": "3833", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudooceanicola nitratireducens" ], "sample_taxid": [ "517719" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.121 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4068972", "Number of Sequences": "11", "Longest Sequences (bp)": "3458180", "N50 (bp)": "3458180", "Gap Ratio (%)": "0.017154", "GCcontent (%)": "64.2", "Number of CDSs": "3893", "Average Protein Length": "309.2", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudooceanicola nitratireducens", "strain": "strain=DSM 29619", "accession": "GCA_900112545.1", "taxid": 517719, "species_taxid": 517719, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1350, "total_fragments": 1351, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudooceanicola nitratireducens", "strain": "strain=CGMCC 1.7292", "accession": "GCA_900109195.1", "taxid": 517719, "species_taxid": 517719, "relation_to_type": "type", "validated": true, "ani": 99.9749, "matched_fragments": 1336, "total_fragments": 1351, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudooceanicola onchidii", "strain": "strain=XY-99", "accession": "GCA_004959925.1", "taxid": 2562279, "species_taxid": 2562279, "relation_to_type": "type", "validated": true, "ani": 82.8478, "matched_fragments": 865, "total_fragments": 1351, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola marinus", "strain": "strain=LMG 23705", "accession": "GCA_002786295.1", "taxid": 396013, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 77.9533, "matched_fragments": 420, "total_fragments": 1351, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 77.8731, "matched_fragments": 326, "total_fragments": 1351, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 77.6518, "matched_fragments": 352, "total_fragments": 1351, "ani_threshold": 95, "status": "below_threshold" } ], 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