{
    "type": "genome",
    "identifier": "GCF_900112585.1",
    "organism": "Kushneria avicenniae",
    "title": "Kushneria avicenniae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900112585.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05421848",
        "wgs_master": "FOLY00000000.1",
        "refseq_category": "reference genome",
        "taxid": "402385",
        "species_taxid": "402385",
        "organism_name": "Kushneria avicenniae",
        "infraspecific_name": "strain=DSM 23439",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/02",
        "asm_name": "IMG-taxon 2684623008 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900112585.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/585/GCF_900112585.1_IMG-taxon_2684623008_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3605329",
        "genome_size_ungapped": "3605329",
        "gc_percent": "60.500000",
        "replicon_count": "0",
        "scaffold_count": "16",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900112585.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3321",
        "protein_coding_gene_count": "3236",
        "non_coding_gene_count": "71",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-02",
    "dateModified": "2016-11-02",
    "datePublished": "2016-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kushneria avicenniae"
        ],
        "sample_taxid": [
            "402385"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.009 MB",
        "sample_ph_range": {
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            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
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        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
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        "Total Sequence Length (bp)": "3605329",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "704352",
        "N50 (bp)": "621198",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.3",
        "Number of CDSs": "3254",
        "Average Protein Length": "327.5",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "5",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
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                "species_taxid": 184067,
                "relation_to_type": "type",
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            {
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                "matched_fragments": 982,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas ethanolica",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas lysinitropha",
                "strain": "strain=3(2)",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas kenyensis",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Halomonas sulfidoxydans",
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                "accession": "GCA_017868775.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Kushneria",
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                "mean_intra_species_ani": "N/A",
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        ]
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}