{ "type": "genome", "identifier": "GCF_900112595.1", "organism": "Algibacter pectinivorans", "title": "Algibacter pectinivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900112595.1", "bioproject": "PRJNA224116", "biosample": "SAMN04487987", "wgs_master": "FOMI00000000.1", "refseq_category": "reference genome", "taxid": "870482", "species_taxid": "870482", "organism_name": "Algibacter pectinivorans", "infraspecific_name": "strain=DSM 25730", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2615840709 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900112595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/595/GCF_900112595.1_IMG-taxon_2615840709_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3649358", "genome_size_ungapped": "3643063", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900112595.1-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "3163", "protein_coding_gene_count": "3100", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Algibacter pectinivorans" ], "sample_taxid": [ "870482" ], 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"below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 77.3689, "matched_fragments": 189, "total_fragments": 1205, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900112595.1", "gtdb_species": "s__Algibacter_B pectinivorans", "ani": 100.0, "matched_fragments": 1200, "total_fragments": 1205, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014202225.1", "gtdb_species": 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