{ "type": "genome", "identifier": "GCF_900112645.1", "organism": "Pseudomonas straminea", "title": "Pseudomonas straminea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900112645.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216372", "wgs_master": "FOMO00000000.1", "refseq_category": "reference genome", "taxid": "47882", "species_taxid": "47882", "organism_name": "Pseudomonas straminea", "infraspecific_name": "strain=JCM 2783", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2663762767 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900112645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/645/GCF_900112645.1_IMG-taxon_2663762767_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4992198", "genome_size_ungapped": "4992003", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900112645.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4647", "protein_coding_gene_count": "4546", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas straminea" ], "sample_taxid": [ "47882" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.383 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4992198", "Number of Sequences": "21", "Longest Sequences (bp)": "926042", "N50 (bp)": "548417", "Gap Ratio (%)": "0.003906", "GCcontent (%)": "63.2", "Number of CDSs": "4602", "Average Protein Length": "322.5", "Coding Ratio (%)": "89.2", "Number of rRNAs": "4", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas argentinensis", "strain": "strain=CCUG 50743", "accession": "GCA_008801645.1", 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