{
    "type": "genome",
    "identifier": "GCF_900112695.1",
    "organism": "Paenibacillus catalpae",
    "title": "Paenibacillus catalpae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900112695.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216378",
        "wgs_master": "FOMT00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1045775",
        "species_taxid": "1045775",
        "organism_name": "Paenibacillus catalpae",
        "infraspecific_name": "strain=CGMCC 1.10784",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/05",
        "asm_name": "IMG-taxon 2675903006 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900112695.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/695/GCF_900112695.1_IMG-taxon_2675903006_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6620053",
        "genome_size_ungapped": "6618231",
        "gc_percent": "49.500000",
        "replicon_count": "0",
        "scaffold_count": "14",
        "contig_count": "14",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900112695.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "5940",
        "protein_coding_gene_count": "5818",
        "non_coding_gene_count": "82",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-05",
    "dateModified": "2016-11-05",
    "datePublished": "2016-11-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus catalpae"
        ],
        "sample_taxid": [
            "1045775"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.884 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6620053",
        "Number of Sequences": "14",
        "Longest Sequences (bp)": "1786082",
        "N50 (bp)": "943211",
        "Gap Ratio (%)": "0.027522",
        "GCcontent (%)": "49.5",
        "Number of CDSs": "5929",
        "Average Protein Length": "330.0",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paenibacillus catalpae",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2200,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Paenibacillus glycanilyticus subsp. hiroshimensis",
                "strain": "strain=CCI5",
                "accession": "GCA_015473105.1",
                "taxid": 2805378,
                "species_taxid": 126569,
                "relation_to_type": "type",
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                "ani": 84.2516,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus glycanilyticus",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus lupini",
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                "accession": "GCA_011761355.1",
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                "species_taxid": 1450204,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1534,
                "matched_fragments": 1552,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus radicis",
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                "accession": "GCA_014641555.1",
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                "species_taxid": 1737354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7313,
                "matched_fragments": 442,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus pinisoli",
                "strain": "strain=JCM 19203",
                "accession": "GCA_003605435.1",
                "taxid": 1276110,
                "species_taxid": 1276110,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8474,
                "matched_fragments": 301,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus taihuensis",
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                "accession": "GCA_003386535.1",
                "taxid": 1156355,
                "species_taxid": 1156355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3799,
                "matched_fragments": 270,
                "total_fragments": 2200,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus artemisiicola",
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                "accession": "GCA_017652985.1",
                "taxid": 1172618,
                "species_taxid": 1172618,
                "relation_to_type": "type",
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                "ani": 77.3335,
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                "total_fragments": 2200,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus tarimensis",
                "strain": "strain=DSM 19409",
                "accession": "GCA_021532315.1",
                "taxid": 416012,
                "species_taxid": 416012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9066,
                "matched_fragments": 132,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus farraposensis",
                "strain": "strain=UY79",
                "accession": "GCA_020736845.1",
                "taxid": 2807095,
                "species_taxid": 2807095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7755,
                "matched_fragments": 67,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus agri",
                "strain": "strain=JW14",
                "accession": "GCA_013359945.1",
                "taxid": 2744309,
                "species_taxid": 2744309,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3885,
                "matched_fragments": 103,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus piscarius",
                "strain": "strain=P121",
                "accession": "GCA_022234545.1",
                "taxid": 1089681,
                "species_taxid": 1089681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1077,
                "matched_fragments": 135,
                "total_fragments": 2200,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_900112695.1",
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                "total_fragments": 2200,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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                "status": "conclusive"
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            {
                "accession": "GCF_000023585.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
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            {
                "accession": "GCF_004000805.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
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                "accession": "GCF_004345425.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C",
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                "status": "-"
            },
            {
                "accession": "GCF_011761355.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.188,
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        "sporulation": 1.0,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.9,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
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        "catalpae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}