{ "type": "genome", "identifier": "GCF_900112925.1", "organism": "Paenibacillus algorifonticola", "title": "Paenibacillus algorifonticola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900112925.1", "bioproject": "PRJNA224116", "biosample": "SAMN04487969", "wgs_master": "FONN00000000.1", "refseq_category": "reference genome", "taxid": "684063", "species_taxid": "684063", "organism_name": "Paenibacillus algorifonticola", "infraspecific_name": "strain=CGMCC 1.10223", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/05", "asm_name": "IMG-taxon 2617270911 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900112925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/112/925/GCF_900112925.1_IMG-taxon_2617270911_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7468281", "genome_size_ungapped": "7462169", "gc_percent": "48.500000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900112925.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "6759", "protein_coding_gene_count": "6535", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-05", "dateModified": "2016-11-05", "datePublished": "2016-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus algorifonticola" ], "sample_taxid": [ "684063" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.126 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7468281", "Number of Sequences": "76", "Longest Sequences (bp)": "1140194", "N50 (bp)": "226336", "Gap Ratio (%)": "0.081839", "GCcontent (%)": "48.4", "Number of CDSs": "6674", "Average Protein Length": "319.1", "Coding Ratio (%)": "85.5", "Number of rRNAs": "0", "Number of tRNAs": "68", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus algorifonticola", "strain": "strain=CGMCC 1.10223", "accession": "GCA_900112925.1", "taxid": 684063, "species_taxid": 684063, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2446, "total_fragments": 2451, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus algorifonticola", "strain": "strain=XJ259", "accession": "GCA_000971975.1", "taxid": 684063, "species_taxid": 684063, "relation_to_type": "type", "validated": true, "ani": 99.9829, "matched_fragments": 2404, "total_fragments": 2451, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus luteus", "strain": "strain=R-3", "accession": "GCA_006542765.1", "taxid": 2545753, "species_taxid": 2545753, "relation_to_type": "type", "validated": true, "ani": 78.3261, "matched_fragments": 420, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus radicis", "strain": "strain=CGMCC 1.15286", "accession": "GCA_014641555.1", "taxid": 1737354, "species_taxid": 1737354, "relation_to_type": "type", 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus harenae", "strain": "strain=DSM 16969", "accession": "GCA_000422465.1", "taxid": 306543, "species_taxid": 306543, "relation_to_type": "type", "validated": true, "ani": 77.8779, "matched_fragments": 343, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus alkaliterrae", "strain": "strain=DSM 17040", "accession": "GCA_021532375.1", "taxid": 320909, "species_taxid": 320909, "relation_to_type": "type", "validated": true, "ani": 77.7966, "matched_fragments": 324, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus pinihumi", "strain": "strain=DSM 23905", "accession": "GCA_000422505.1", "taxid": 669462, "species_taxid": 669462, "relation_to_type": "type", "validated": true, "ani": 77.269, "matched_fragments": 195, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus albus", "strain": "strain=18JY67-1", "accession": "GCA_003952225.1", "taxid": 2495582, "species_taxid": 2495582, "relation_to_type": "type", "validated": true, "ani": 77.2297, "matched_fragments": 200, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus agri", "strain": "strain=JW14", "accession": "GCA_013359945.1", "taxid": 2744309, "species_taxid": 2744309, "relation_to_type": "type", "validated": true, "ani": 77.2149, "matched_fragments": 107, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus lignilyticus", "strain": "strain=DLE-14", "accession": "GCA_017942085.1", "taxid": 1172615, "species_taxid": 1172615, "relation_to_type": "type", "validated": true, "ani": 77.2098, "matched_fragments": 179, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus oryzae", "strain": "strain=1DrF-4", "accession": "GCA_001675045.1", "taxid": 1844972, "species_taxid": 1844972, "relation_to_type": "type", "validated": true, "ani": 77.126, "matched_fragments": 239, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus taihuensis", "strain": "strain=CGMCC 1.10966", "accession": "GCA_003386535.1", "taxid": 1156355, "species_taxid": 1156355, "relation_to_type": "type", "validated": true, "ani": 77.0465, "matched_fragments": 186, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus methanolicus", "strain": "strain=BL24", "accession": "GCA_008124765.1", "taxid": 582686, "species_taxid": 582686, "relation_to_type": "type", "validated": true, "ani": 76.8315, "matched_fragments": 207, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus xylaniclasticus", "strain": "strain=NBRC 106381", "accession": "GCA_004001065.1", "taxid": 588083, "species_taxid": 588083, "relation_to_type": "type", "validated": true, "ani": 76.826, "matched_fragments": 152, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus darwinianus", "strain": "strain=Br", "accession": "GCA_000598065.1", "taxid": 1380763, "species_taxid": 1380763, "relation_to_type": "type", "validated": true, "ani": 76.6403, "matched_fragments": 127, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus timonensis", "strain": "strain=DSM 16943", "accession": "GCA_022427145.1", "taxid": 225915, "species_taxid": 225915, "relation_to_type": "type", "validated": true, "ani": 76.0618, "matched_fragments": 93, "total_fragments": 2451, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000971975.1", 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"s__Paenibacillus_C sp012935325", "ani": 78.8373, "matched_fragments": 409, "total_fragments": 2451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006542765.1", "gtdb_species": "s__Paenibacillus_C luteus", "ani": 78.3675, "matched_fragments": 416, "total_fragments": 2451, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014641555.1", "gtdb_species": "s__Paenibacillus_C radicis", "ani": 78.245, 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