{ "type": "genome", "identifier": "GCF_900113015.1", "organism": "Actinoplanes philippinensis", "title": "Actinoplanes philippinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900113015.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421541", "wgs_master": "FONV00000000.1", "refseq_category": "reference genome", "taxid": "35752", "species_taxid": "35752", "organism_name": "Actinoplanes philippinensis", "infraspecific_name": "strain=DSM 43019", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/05", "asm_name": "IMG-taxon 2675903218 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900113015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/113/015/GCF_900113015.1_IMG-taxon_2675903218_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10381230", "genome_size_ungapped": "10381230", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900113015.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "9473", "protein_coding_gene_count": "9284", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-05", "dateModified": "2016-11-05", "datePublished": "2016-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes philippinensis" ], "sample_taxid": [ "35752" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.771 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10381230", "Number of Sequences": "59", "Longest Sequences (bp)": "805299", "N50 (bp)": "527412", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.4", "Number of CDSs": "9530", "Average Protein Length": "328.6", "Coding Ratio (%)": "90.5", "Number of rRNAs": "1", "Number of tRNAs": "97", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes philippinensis", "strain": "strain=DSM 43019", "accession": "GCA_900113015.1", 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95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium matsuzakiense", "strain": "strain=NRRL B-16293", "accession": "GCA_025264725.1", "taxid": 53360, "species_taxid": 53360, "relation_to_type": "type", "validated": true, "ani": 77.3185, "matched_fragments": 1294, "total_fragments": 3428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium fulvum", "strain": "strain=NRRL B-16292", "accession": "GCA_025137375.1", "taxid": 53359, "species_taxid": 53359, "relation_to_type": "type", "validated": true, "ani": 77.3156, "matched_fragments": 1216, "total_fragments": 3428, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900113015.1", "gtdb_species": "s__Actinoplanes philippinensis", "ani": 100.0, "matched_fragments": 3424, "total_fragments": 3428, "gtdb_taxonomy": 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