{ "type": "genome", "identifier": "GCF_900113315.1", "organism": "Sphingomonas jatrophae", "title": "Sphingomonas jatrophae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900113315.1", "bioproject": "PRJNA224116", "biosample": "SAMN05192580", "wgs_master": "FOZG00000000.1", "refseq_category": "reference genome", "taxid": "1166337", "species_taxid": "1166337", "organism_name": "Sphingomonas jatrophae", "infraspecific_name": "strain=S5-249", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2654588199 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900113315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/113/315/GCF_900113315.1_IMG-taxon_2654588199_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4060565", "genome_size_ungapped": "4060565", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900113315.1-RS_2024_04_11", "annotation_date": "2024-04-11", "total_gene_count": "3888", "protein_coding_gene_count": "3814", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas jatrophae" ], "sample_taxid": [ "1166337" ], 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"GCA_004564275.1", "taxid": 2555898, "species_taxid": 2555898, "relation_to_type": "type", "validated": true, "ani": 78.3478, "matched_fragments": 390, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinicella ginsenosidimutans", "strain": "strain=BS-11", "accession": "GCA_007995055.1", "taxid": 1176539, "species_taxid": 1176539, "relation_to_type": "type", "validated": true, "ani": 78.3465, "matched_fragments": 393, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas arenae", "strain": "strain=SYSU D00720", "accession": "GCA_016924655.1", "taxid": 2812555, "species_taxid": 2812555, "relation_to_type": "type", "validated": true, "ani": 78.0053, "matched_fragments": 225, "total_fragments": 1350, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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