{ "type": "genome", "identifier": "GCF_900113405.1", "organism": "Palleronia marisminoris", "title": "Palleronia marisminoris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900113405.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488020", "wgs_master": "FOPF00000000.1", "refseq_category": "reference genome", "taxid": "315423", "species_taxid": "315423", "organism_name": "Palleronia marisminoris", "infraspecific_name": "strain=DSM 26347", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2615840708 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900113405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/113/405/GCF_900113405.1_IMG-taxon_2615840708_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3937250", "genome_size_ungapped": "3937250", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900113405.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3947", "protein_coding_gene_count": "3812", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Palleronia marisminoris" ], "sample_taxid": [ "315423" ], 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2489174, "species_taxid": 2489174, "relation_to_type": "type", "validated": true, "ani": 77.926, "matched_fragments": 302, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 77.9215, "matched_fragments": 410, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aminovorans", "strain": "strain=DSM 8537", "accession": "GCA_900113565.1", "taxid": 34004, "species_taxid": 34004, "relation_to_type": "type", "validated": true, "ani": 77.8945, "matched_fragments": 324, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900172315.1", "gtdb_species": "s__Palleronia 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