{
    "type": "genome",
    "identifier": "GCF_900113465.1",
    "organism": "Methylobacterium phyllosphaerae",
    "title": "Methylobacterium phyllosphaerae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900113465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05192567",
        "wgs_master": "FOPK00000000.1",
        "refseq_category": "na",
        "taxid": "418223",
        "species_taxid": "418223",
        "organism_name": "Methylobacterium phyllosphaerae",
        "infraspecific_name": "strain=CBMB27",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/05",
        "asm_name": "IMG-taxon 2651870129 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900113465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/113/465/GCF_900113465.1_IMG-taxon_2651870129_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6203749",
        "genome_size_ungapped": "6203179",
        "gc_percent": "69.500000",
        "replicon_count": "0",
        "scaffold_count": "81",
        "contig_count": "81",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900113465.1-RS_2024_04_24",
        "annotation_date": "2024-04-24",
        "total_gene_count": "5858",
        "protein_coding_gene_count": "5681",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-05",
    "dateModified": "2016-11-05",
    "datePublished": "2016-11-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylobacterium phyllosphaerae"
        ],
        "sample_taxid": [
            "418223"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.687 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6203749",
        "Number of Sequences": "81",
        "Longest Sequences (bp)": "371226",
        "N50 (bp)": "187673",
        "Gap Ratio (%)": "0.009188",
        "GCcontent (%)": "69.6",
        "Number of CDSs": "5817",
        "Average Protein Length": "301.4",
        "Coding Ratio (%)": "84.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Methylobacterium phyllosphaerae",
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                "accession": "GCA_900113465.1",
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                "species_taxid": 418223,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2026,
                "total_fragments": 2031,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Methylobacterium phyllosphaerae",
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                "species_taxid": 418223,
                "relation_to_type": "suspected-type",
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                "ani": 99.9944,
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                "total_fragments": 2031,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methylobacterium radiotolerans",
                "strain": "strain=JCM 2831",
                "accession": "GCA_000019725.1",
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                "species_taxid": 31998,
                "relation_to_type": "type",
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                "ani": 90.7897,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium radiotolerans",
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                "accession": "GCA_007991055.1",
                "taxid": 31998,
                "species_taxid": 31998,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.7457,
                "matched_fragments": 1607,
                "total_fragments": 2031,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium tardum",
                "strain": "strain=NBRC 103632",
                "accession": "GCA_022179585.1",
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                "species_taxid": 374432,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1435,
                "total_fragments": 2031,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium tardum",
                "strain": "strain=DSM 19566",
                "accession": "GCA_023546765.1",
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                "matched_fragments": 1476,
                "total_fragments": 2031,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium longum",
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                "accession": "GCA_022179385.1",
                "taxid": 767694,
                "species_taxid": 767694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2202,
                "matched_fragments": 1410,
                "total_fragments": 2031,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium phyllostachyos",
                "strain": "strain=BL47",
                "accession": "GCA_900103445.1",
                "taxid": 582672,
                "species_taxid": 582672,
                "relation_to_type": "type",
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                "ani": 86.5817,
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                "total_fragments": 2031,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium mesophilicum",
                "strain": "strain=NBRC 15688",
                "accession": "GCA_022179445.1",
                "taxid": 39956,
                "species_taxid": 39956,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6485,
                "matched_fragments": 1364,
                "total_fragments": 2031,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium aerolatum",
                "strain": "strain=DSM 19013",
                "accession": "GCA_022179085.1",
                "taxid": 418708,
                "species_taxid": 418708,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6657,
                "matched_fragments": 1055,
                "total_fragments": 2031,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_014138435.1",
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                "matched_fragments": 1806,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "98.73",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 12,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003096615.1",
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                "mean_intra_species_ani": "98.99",
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                "min_intra_species_af": "0.88",
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                "status": "-"
            },
            {
                "accession": "GCF_900112625.1",
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            },
            {
                "accession": "GCF_900103195.1",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_009806555.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.194,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "phyllosphaerae"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}