{ "tc_result": [ { "organism_name": "Neisseria elongata subsp. elongata", "strain": "strain=ATCC 25295", "accession": "GCA_900113545.1", "taxid": 214482, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 773, "total_fragments": 775, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria elongata", "strain": "strain=NCTC10660", "accession": "GCA_900453895.1", "taxid": 495, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 99.9957, "matched_fragments": 774, "total_fragments": 775, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria elongata subsp. glycolytica", "strain": "strain=ATCC 29315", "accession": "GCA_000818035.1", "taxid": 88719, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 96.1039, "matched_fragments": 676, "total_fragments": 775, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria elongata subsp. glycolytica", "strain": "strain=NCTC11050", "accession": "GCA_900475815.1", "taxid": 88719, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 96.0764, "matched_fragments": 671, "total_fragments": 775, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria sicca", "strain": "strain=DSM 17713", "accession": "GCA_014054945.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 84.8712, "matched_fragments": 402, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=ATCC 29256", "accession": "GCA_000174655.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 84.8466, "matched_fragments": 391, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_000813705.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 84.3697, "matched_fragments": 371, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_022749515.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 84.1554, "matched_fragments": 399, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=CCUG 2156", "accession": "GCA_021025975.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 82.9973, "matched_fragments": 311, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria meningitidis", "strain": "strain=PartJ-Nmeningitidis-RM8376", "accession": "GCA_022869645.1", "taxid": 487, "species_taxid": 487, "relation_to_type": "type", "validated": true, "ani": 82.6377, "matched_fragments": 331, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria perflava", "strain": "strain=CCUG 17915", "accession": "GCA_023472875.1", "taxid": 33053, "species_taxid": 33053, "relation_to_type": "suspected-type", "validated": true, "ani": 81.5349, "matched_fragments": 321, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria bacilliformis", "strain": "strain=ATCC BAA-1200", "accession": "GCA_000194925.1", "taxid": 267212, "species_taxid": 267212, "relation_to_type": "type", "validated": true, "ani": 81.3688, "matched_fragments": 474, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria canis", "strain": "strain=ATCC 14687", "accession": "GCA_002108495.1", "taxid": 493, "species_taxid": 493, "relation_to_type": "type", "validated": true, "ani": 78.722, "matched_fragments": 270, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 92.72, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900113545.1", "gtdb_species": "s__Neisseria elongata", "ani": 100.0, "matched_fragments": 773, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.68", "min_intra_species_ani": "96.06", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 20, "status": "conclusive" }, { "accession": "GCF_003044565.1", "gtdb_species": "s__Neisseria sicca_A", "ani": 84.9144, "matched_fragments": 389, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.01", "min_intra_species_ani": "95.27", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_001067655.1", "gtdb_species": "s__Neisseria lactamica_B", "ani": 84.8771, "matched_fragments": 338, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.406, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001809325.1", "gtdb_species": "s__Neisseria sp001809325", "ani": 84.8562, "matched_fragments": 373, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.406, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000220865.1", "gtdb_species": "s__Neisseria macacae", "ani": 84.7664, "matched_fragments": 390, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 96.509, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014054945.1", "gtdb_species": "s__Neisseria sicca", "ani": 84.7522, "matched_fragments": 407, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 96.5569, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000227275.1", "gtdb_species": "s__Neisseria sp000227275", "ani": 84.7495, "matched_fragments": 398, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 96.3387, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000260655.1", "gtdb_species": "s__Neisseria sicca_B", "ani": 84.6951, "matched_fragments": 377, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 96.5569, "mean_intra_species_ani": "97.07", "min_intra_species_ani": "96.76", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_017753665.1", "gtdb_species": "s__Neisseria sicca_D", "ani": 84.6388, "matched_fragments": 382, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.2415, "mean_intra_species_ani": "96.44", "min_intra_species_ani": "95.35", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003044425.1", "gtdb_species": "s__Neisseria sicca_C", "ani": 84.6296, "matched_fragments": 369, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.8064, "mean_intra_species_ani": "96.78", "min_intra_species_ani": "96.77", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", 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"status": "-" }, { "accession": "GCA_003028315.1", "gtdb_species": "s__Neisseria mucosa", "ani": 84.3865, "matched_fragments": 386, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 96.5429, "mean_intra_species_ani": "96.97", "min_intra_species_ani": "96.70", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_005886145.1", "gtdb_species": "s__Neisseria sp000090875", "ani": 84.1834, "matched_fragments": 387, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "97.41", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": 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"total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002951835.1", "gtdb_species": "s__Simonsiella muelleri", "ani": 77.3341, "matched_fragments": 65, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Simonsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" } ] }