{ "type": "genome", "identifier": "GCF_900113605.1", "organism": "Modicisalibacter xianhensis", "title": "Modicisalibacter xianhensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900113605.1", "bioproject": "PRJNA224116", "biosample": "SAMN04487959", "wgs_master": "FOPY00000000.1", "refseq_category": "reference genome", "taxid": "442341", "species_taxid": "442341", "organism_name": "Modicisalibacter xianhensis", "infraspecific_name": "strain=CGMCC 1.6848", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2617270878 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900113605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/113/605/GCF_900113605.1_IMG-taxon_2617270878_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4357925", "genome_size_ungapped": "4357293", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900113605.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "4103", "protein_coding_gene_count": "4001", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Modicisalibacter xianhensis" ], "sample_taxid": [ "442341" ], 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{ "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 79.663, "matched_fragments": 523, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 79.6574, "matched_fragments": 508, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aestuarii", "strain": "strain=Hb3", "accession": "GCA_001886615.1", "taxid": 1897729, "species_taxid": 1897729, "relation_to_type": "type", "validated": true, "ani": 79.5502, "matched_fragments": 507, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": 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77098, "species_taxid": 77098, "relation_to_type": "type", "validated": true, "ani": 79.219, "matched_fragments": 491, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola rhizosphaerae", "strain": "strain=KCTC 32998", "accession": "GCA_014652715.1", "taxid": 1443141, "species_taxid": 1443141, "relation_to_type": "type", "validated": true, "ani": 78.3217, "matched_fragments": 357, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900113605.1", "gtdb_species": "s__Halomonas_C xianhensis", "ani": 100.0, "matched_fragments": 1429, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.25", "min_intra_species_ani": "96.25", 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