{
    "type": "genome",
    "identifier": "GCF_900113695.1",
    "organism": "Albimonas pacifica",
    "title": "Albimonas pacifica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900113695.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216258",
        "wgs_master": "FOQH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1114924",
        "species_taxid": "1114924",
        "organism_name": "Albimonas pacifica",
        "infraspecific_name": "strain=CGMCC 1.11030",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/04",
        "asm_name": "IMG-taxon 2667527406 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900113695.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/113/695/GCF_900113695.1_IMG-taxon_2667527406_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6027197",
        "genome_size_ungapped": "6027187",
        "gc_percent": "73.000000",
        "replicon_count": "0",
        "scaffold_count": "68",
        "contig_count": "68",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900113695.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "5383",
        "protein_coding_gene_count": "5287",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-04",
    "dateModified": "2016-11-04",
    "datePublished": "2016-11-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Albimonas pacifica"
        ],
        "sample_taxid": [
            "1114924"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.589 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6027197",
        "Number of Sequences": "68",
        "Longest Sequences (bp)": "706344",
        "N50 (bp)": "578405",
        "Gap Ratio (%)": "0.000166",
        "GCcontent (%)": "72.9",
        "Number of CDSs": "5350",
        "Average Protein Length": "327.9",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "4",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Albimonas pacifica",
                "strain": "strain=CGMCC 1.11030",
                "accession": "GCA_900113695.1",
                "taxid": 1114924,
                "species_taxid": 1114924,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1971,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Albimonas donghaensis",
                "strain": "strain=DSM 17890",
                "accession": "GCA_900106695.1",
                "taxid": 356660,
                "species_taxid": 356660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8272,
                "matched_fragments": 1132,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanicella actignis",
                "strain": "strain=DSM 22673",
                "accession": "GCA_008124525.1",
                "taxid": 1189325,
                "species_taxid": 1189325,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9589,
                "matched_fragments": 692,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paroceanicella profunda",
                "strain": "strain=D4M1",
                "accession": "GCA_005887635.2",
                "taxid": 2579971,
                "species_taxid": 2579971,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2957,
                "matched_fragments": 707,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halovulum marinum",
                "strain": "strain=2CG4",
                "accession": "GCA_009697225.1",
                "taxid": 2662447,
                "species_taxid": 2662447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2145,
                "matched_fragments": 649,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermohalobaculum xanthum",
                "strain": "strain=M0105",
                "accession": "GCA_016623495.1",
                "taxid": 2753746,
                "species_taxid": 2753746,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0765,
                "matched_fragments": 507,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limimaricola pyoseonensis",
                "strain": "strain=DSM 21424",
                "accession": "GCA_900102015.1",
                "taxid": 521013,
                "species_taxid": 521013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0248,
                "matched_fragments": 615,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger thiooxidans",
                "strain": "strain=DSM 10146",
                "accession": "GCA_900102075.1",
                "taxid": 282683,
                "species_taxid": 282683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8216,
                "matched_fragments": 632,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontivivens ytuae",
                "strain": "strain=MT2928",
                "accession": "GCA_015679265.1",
                "taxid": 2789856,
                "species_taxid": 2789856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.78,
                "matched_fragments": 512,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubellimicrobium aerolatum",
                "strain": "strain=DSM 19297",
                "accession": "GCA_017872975.1",
                "taxid": 490979,
                "species_taxid": 490979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1992,
                "matched_fragments": 498,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frigidibacter albus",
                "strain": "strain=CGMCC 1.13995",
                "accession": "GCA_014640395.1",
                "taxid": 1465486,
                "species_taxid": 1465486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1769,
                "matched_fragments": 508,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frigidibacter albus",
                "strain": "strain=SP32",
                "accession": "GCA_009881095.1",
                "taxid": 1465486,
                "species_taxid": 1465486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1154,
                "matched_fragments": 506,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frigidibacter albus",
                "strain": "strain=SP32",
                "accession": "GCA_009908165.1",
                "taxid": 1465486,
                "species_taxid": 1465486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1082,
                "matched_fragments": 510,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus solventivorans",
                "strain": "strain=DSM 6637",
                "accession": "GCA_900142875.1",
                "taxid": 53463,
                "species_taxid": 53463,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0852,
                "matched_fragments": 439,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mangrovicoccus ximenensis",
                "strain": "strain=T1lg56",
                "accession": "GCA_003056725.1",
                "taxid": 1911570,
                "species_taxid": 1911570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0649,
                "matched_fragments": 572,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinihabitans flavidus",
                "strain": "strain=DSM 27842",
                "accession": "GCA_900110425.1",
                "taxid": 569882,
                "species_taxid": 569882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4411,
                "matched_fragments": 271,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microvirga splendida",
                "strain": "strain=BT325",
                "accession": "GCA_016427565.1",
                "taxid": 2795727,
                "species_taxid": 2795727,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3536,
                "matched_fragments": 261,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedomonas mirosovicensis",
                "strain": "strain=A1X5R2",
                "accession": "GCA_022569295.1",
                "taxid": 2908641,
                "species_taxid": 2908641,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1941,
                "matched_fragments": 202,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium crusticola",
                "strain": "strain=KCTC 52305",
                "accession": "GCA_022179145.1",
                "taxid": 1697972,
                "species_taxid": 1697972,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1083,
                "matched_fragments": 675,
                "total_fragments": 1973,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900113695.1",
                "gtdb_species": "s__Albimonas pacifica",
                "ani": 100.0,
                "matched_fragments": 1971,
                "total_fragments": 1973,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Albimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900106695.1",
                "gtdb_species": "s__Albimonas donghaensis",
                "ani": 81.7986,
                "matched_fragments": 1137,
                "total_fragments": 1973,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Albimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.11",
                "min_intra_species_ani": "97.08",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_008124525.1",
                "gtdb_species": "s__Oceanicella actignis",
                "ani": 78.8894,
                "matched_fragments": 703,
                "total_fragments": 1973,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Oceanicella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
                "min_intra_species_ani": "98.87",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003448965.1",
                "gtdb_species": "s__Paroceanicella sp003448965",
                "ani": 78.5501,
                "matched_fragments": 799,
                "total_fragments": 1973,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paroceanicella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005887635.2",
                "gtdb_species": "s__Paroceanicella profunda",
                "ani": 78.2841,
                "matched_fragments": 708,
                "total_fragments": 1973,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paroceanicella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016623495.1",
                "gtdb_species": "s__Limibaculum sp016623495",
                "ani": 78.055,
                "matched_fragments": 510,
                "total_fragments": 1973,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Limibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900102015.1",
                "gtdb_species": "s__Limimaricola pyoseonensis",
                "ani": 78.0232,
                "matched_fragments": 615,
                "total_fragments": 1973,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Limimaricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003340565.1",
                "gtdb_species": "s__HLUCCA09 sp003340565",
                "ani": 77.6297,
                "matched_fragments": 587,
                "total_fragments": 1973,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__HLUCCA09",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003340555.1",
                "gtdb_species": "s__Jannaschia formosa",
                "ani": 77.5956,
                "matched_fragments": 587,
                "total_fragments": 1973,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Jannaschia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014656415.1",
                "gtdb_species": "s__Seohaeicola zhoushanensis",
                "ani": 77.4592,
                "matched_fragments": 580,
                "total_fragments": 1973,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Seohaeicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003241785.1",
                "gtdb_species": "s__Amaricoccus sp003241785",
                "ani": 77.3705,
                "matched_fragments": 629,
                "total_fragments": 1973,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Amaricoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005870025.1",
                "gtdb_species": "s__Mangrovicoccus sp005870025",
                "ani": 77.3203,
                "matched_fragments": 740,
                "total_fragments": 1973,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Mangrovicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002423245.1",
                "gtdb_species": "s__Frigidibacter sp002423245",
                "ani": 77.1039,
                "matched_fragments": 428,
                "total_fragments": 1973,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Frigidibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.55",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.477,
        "doubling_h": null,
        "growth_tmp": 33.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.5,
        "genome_size": 6027197.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Albimonas",
        "pacifica"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}