{
    "type": "genome",
    "identifier": "GCF_900113745.1",
    "organism": "Pseudomonas guineae",
    "title": "Pseudomonas guineae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900113745.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216206",
        "wgs_master": "FOQL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "425504",
        "species_taxid": "425504",
        "organism_name": "Pseudomonas guineae",
        "infraspecific_name": "strain=LMG 24016",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/02",
        "asm_name": "IMG-taxon 2667527413 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900113745.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/113/745/GCF_900113745.1_IMG-taxon_2667527413_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4149587",
        "genome_size_ungapped": "4149427",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "10",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900113745.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "3856",
        "protein_coding_gene_count": "3767",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-02",
    "dateModified": "2016-11-02",
    "datePublished": "2016-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas guineae"
        ],
        "sample_taxid": [
            "425504"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.171 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4149587",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "1979549",
        "N50 (bp)": "579936",
        "Gap Ratio (%)": "0.003856",
        "GCcontent (%)": "58.5",
        "Number of CDSs": "3844",
        "Average Protein Length": "322.0",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "4",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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            {
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                "validated": true,
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                "status": "below_threshold"
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            {
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            {
                "organism_name": "Pseudomonas tumuqii",
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                "species_taxid": 2715755,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas borbori",
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                "species_taxid": 289003,
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                "validated": true,
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                "matched_fragments": 827,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas cuatrocienegasensis",
                "strain": "strain=CIP 109853",
                "accession": "GCA_900110925.1",
                "taxid": 543360,
                "species_taxid": 543360,
                "relation_to_type": "type",
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                "matched_fragments": 797,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
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                "accession": "GCA_018398425.1",
                "taxid": 1424203,
                "species_taxid": 1424203,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 759,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas campi",
                "strain": "strain=S1-A32-2",
                "accession": "GCA_013200955.2",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Pseudomonas ullengensis",
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                "species_taxid": 2759166,
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                "validated": true,
                "ani": 80.4727,
                "matched_fragments": 713,
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                "status": "below_threshold"
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            {
                "organism_name": "Pseudomonas hydrolytica",
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                "species_taxid": 2493633,
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                "matched_fragments": 793,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Pseudomonas yangonensis",
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                "ani": 80.0378,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas insulae",
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                "ani": 79.6745,
                "matched_fragments": 638,
                "total_fragments": 1377,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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}