{ "tc_result": [ { "organism_name": "Paraburkholderia megapolitana", "strain": "strain=LMG 23650", "accession": "GCA_900113825.1", "taxid": 420953, "species_taxid": 420953, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2515, "total_fragments": 2517, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia megapolitana", "strain": "strain=LMG 23650", "accession": "GCA_007556815.1", "taxid": 420953, "species_taxid": 420953, "relation_to_type": "type", "validated": true, "ani": 99.9938, "matched_fragments": 2515, "total_fragments": 2517, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia acidicola", "strain": "strain=ATCC 31363", "accession": "GCA_002362315.1", "taxid": 1912599, "species_taxid": 1912599, "relation_to_type": "type", "validated": true, "ani": 92.6116, "matched_fragments": 2036, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia flava", "strain": "strain=LD6", "accession": "GCA_004359985.1", "taxid": 2547393, "species_taxid": 2547393, "relation_to_type": "type", "validated": true, "ani": 84.3664, "matched_fragments": 1518, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia monticola", "strain": "strain=JC2948", "accession": "GCA_001580545.1", "taxid": 1399968, "species_taxid": 1399968, "relation_to_type": "type", "validated": true, "ani": 82.5943, "matched_fragments": 1141, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia gardini", "strain": "strain=LMG 32171", "accession": "GCA_907164575.1", "taxid": 2823469, "species_taxid": 2823469, "relation_to_type": "type", "validated": true, "ani": 82.4974, "matched_fragments": 1032, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia ultramafica", "strain": "strain=LMG 28614", "accession": "GCA_902859915.1", "taxid": 1544867, "species_taxid": 1544867, "relation_to_type": "type", "validated": true, "ani": 82.4604, "matched_fragments": 1093, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 82.2555, "matched_fragments": 1120, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia lacunae", "strain": "strain=S27", "accession": "GCA_003353175.1", "taxid": 2211104, "species_taxid": 2211104, "relation_to_type": "type", "validated": true, "ani": 82.2412, "matched_fragments": 1164, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia saeva", "strain": "strain=LMG 31841", "accession": "GCA_907164555.1", "taxid": 2777537, "species_taxid": 2777537, "relation_to_type": "type", "validated": true, "ani": 82.1664, "matched_fragments": 1057, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia aromaticivorans", "strain": "strain=BN5", "accession": "GCA_002278075.1", "taxid": 2026199, "species_taxid": 2026199, "relation_to_type": "type", "validated": true, "ani": 82.0349, "matched_fragments": 1152, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 81.8127, "matched_fragments": 1233, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia haematera", "strain": "strain=LMG 31837", "accession": "GCA_905220975.1", "taxid": 2793077, "species_taxid": 2793077, "relation_to_type": "type", "validated": true, "ani": 81.6883, "matched_fragments": 1149, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 81.6498, "matched_fragments": 1151, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea sputorum", "strain": "strain=DSM 21091", "accession": "GCA_000814845.2", "taxid": 93222, "species_taxid": 93222, "relation_to_type": "type", "validated": true, "ani": 78.3068, "matched_fragments": 443, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea morbifera", "strain": "strain=LMG 31116", "accession": "GCA_902459575.1", "taxid": 2508300, "species_taxid": 2508300, "relation_to_type": "type", "validated": true, "ani": 77.961, "matched_fragments": 448, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophilus thermoluteolus", "strain": "strain=TH-1", "accession": "GCA_003574215.1", "taxid": 297, "species_taxid": 297, "relation_to_type": "type", "validated": true, "ani": 75.7478, "matched_fragments": 51, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sagittaria", "strain": "strain=JCM 18195", "accession": "GCA_900115715.1", "taxid": 1135990, "species_taxid": 1135990, "relation_to_type": "type", "validated": true, "ani": 75.738, "matched_fragments": 144, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophilus thiooxidans", "strain": "strain=SS56", "accession": "GCA_019049855.1", "taxid": 2820326, "species_taxid": 2820326, "relation_to_type": "type", "validated": true, "ani": 75.338, "matched_fragments": 55, "total_fragments": 2517, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007556815.1", "gtdb_species": "s__Paraburkholderia megapolitana", "ani": 99.9938, "matched_fragments": 2515, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002362315.1", "gtdb_species": "s__Paraburkholderia acidophila", "ani": 92.6062, "matched_fragments": 2037, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004359985.1", "gtdb_species": "s__Paraburkholderia sp004359985", "ani": 84.3558, "matched_fragments": 1520, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011752995.1", "gtdb_species": "s__Paraburkholderia sp011752995", "ani": 82.5862, "matched_fragments": 1101, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "99.21", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001580545.1", "gtdb_species": "s__Paraburkholderia monticola", "ani": 82.5821, "matched_fragments": 1143, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902859915.1", "gtdb_species": "s__Paraburkholderia ultramafica", "ani": 82.4715, "matched_fragments": 1092, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900177725.1", "gtdb_species": "s__Paraburkholderia susongensis", "ani": 82.4365, "matched_fragments": 1169, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013366925.1", "gtdb_species": "s__Paraburkholderia youngii", "ani": 82.3142, "matched_fragments": 1146, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "97.40", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_014397785.1", "gtdb_species": "s__Paraburkholderia sp014397785", "ani": 82.2633, "matched_fragments": 1118, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003353175.1", "gtdb_species": "s__Paraburkholderia lacunae", "ani": 82.2351, "matched_fragments": 1164, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003443895.1", "gtdb_species": "s__Paraburkholderia phosphatilytica", "ani": 82.0443, "matched_fragments": 1212, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002278075.1", "gtdb_species": "s__Paraburkholderia aromaticivorans", "ani": 82.0351, "matched_fragments": 1152, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900142845.1", "gtdb_species": "s__Paraburkholderia phenazinium_A", "ani": 81.9356, "matched_fragments": 1312, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900104845.1", "gtdb_species": "s__Paraburkholderia caballeronis", "ani": 81.8921, "matched_fragments": 1072, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.48", "min_intra_species_ani": "98.95", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_905220975.1", "gtdb_species": "s__Paraburkholderia sp905220975", "ani": 81.6864, "matched_fragments": 1149, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003574215.1", "gtdb_species": "s__Hydrogenophilus thermoluteolus", "ani": 75.7478, "matched_fragments": 51, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Hydrogenophilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900115715.1", "gtdb_species": "s__Pseudomonas_K sagittaria", "ani": 75.7449, "matched_fragments": 143, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_K", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019049855.1", "gtdb_species": "s__Hydrogenophilus sp019049855", "ani": 75.338, "matched_fragments": 55, "total_fragments": 2517, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Hydrogenophilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }