{
    "type": "genome",
    "identifier": "GCF_900114455.1",
    "organism": "Halogranum rubrum",
    "title": "Halogranum rubrum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900114455.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04487950",
        "wgs_master": "FOTC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "553466",
        "species_taxid": "553466",
        "organism_name": "Halogranum rubrum",
        "infraspecific_name": "strain=CGMCC 1.7738",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/02",
        "asm_name": "IMG-taxon 2619618990 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900114455.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/114/455/GCF_900114455.1_IMG-taxon_2619618990_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4566676",
        "genome_size_ungapped": "4566306",
        "gc_percent": "62.000000",
        "replicon_count": "0",
        "scaffold_count": "17",
        "contig_count": "17",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900114455.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "4610",
        "protein_coding_gene_count": "4486",
        "non_coding_gene_count": "77",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-02",
    "dateModified": "2016-11-02",
    "datePublished": "2016-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halogranum rubrum"
        ],
        "sample_taxid": [
            "553466"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.257 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4566676",
        "Number of Sequences": "17",
        "Longest Sequences (bp)": "1656961",
        "N50 (bp)": "1072765",
        "Gap Ratio (%)": "0.008102",
        "GCcontent (%)": "62.2",
        "Number of CDSs": "4503",
        "Average Protein Length": "290.6",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Halogranum rubrum",
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                "accession": "GCA_900114455.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Halogranum salarium",
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                "accession": "GCA_000283335.1",
                "taxid": 693851,
                "species_taxid": 693851,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1284,
                "total_fragments": 1515,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Halogranum amylolyticum",
                "strain": "strain=CGMCC 1.10121",
                "accession": "GCA_900110465.1",
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                "species_taxid": 660520,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halogranum gelatinilyticum",
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                "accession": "GCA_900103715.1",
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                "species_taxid": 660521,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3326,
                "matched_fragments": 859,
                "total_fragments": 1515,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloprofundus halophilus",
                "strain": "strain=NK23",
                "accession": "GCA_003439925.1",
                "taxid": 2283527,
                "species_taxid": 2283527,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 626,
                "total_fragments": 1515,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halogeometricum rufum",
                "strain": "strain=CGMCC 1.7736",
                "accession": "GCA_900112175.1",
                "taxid": 553469,
                "species_taxid": 553469,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1687,
                "matched_fragments": 607,
                "total_fragments": 1515,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900114455.1",
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                "matched_fragments": 1515,
                "total_fragments": 1515,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogranum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.00",
                "min_intra_species_ani": "97.00",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_900110465.1",
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                "matched_fragments": 1025,
                "total_fragments": 1515,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogranum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogranum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003439925.1",
                "gtdb_species": "s__Haloprofundus halophilus",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloprofundus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
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                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900115785.1",
                "gtdb_species": "s__Halogeometricum limi",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogeometricum",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000025685.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
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                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 21,
                "status": "-"
            },
            {
                "accession": "GCF_900112175.1",
                "gtdb_species": "s__Halogeometricum rufum",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halogeometricum",
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                "mean_intra_species_ani": "98.26",
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                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_002844195.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halegenticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.176,
        "cell_length": 0.096,
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        "growth_tmp": 37.0,
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        "gc_content": 62.201,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 1.0,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Halogranum",
        "rubrum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}