{ "type": "genome", "identifier": "GCF_900114485.1", "organism": "Loktanella salsilacus", "title": "Loktanella salsilacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900114485.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488004", "wgs_master": "FOTF00000000.1", "refseq_category": "na", "taxid": "195913", "species_taxid": "195913", "organism_name": "Loktanella salsilacus", "infraspecific_name": "strain=DSM 16199", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2622736595 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900114485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/114/485/GCF_900114485.1_IMG-taxon_2622736595_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4130155", "genome_size_ungapped": "4130155", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "77", "contig_count": "77", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900114485.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4010", "protein_coding_gene_count": "3887", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Loktanella salsilacus" ], "sample_taxid": [ "195913" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.163 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4130155", "Number of Sequences": "77", "Longest Sequences (bp)": "328738", "N50 (bp)": "184482", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.0", "Number of CDSs": "3910", "Average Protein Length": "312.6", "Coding Ratio (%)": "88.8", "Number of rRNAs": "4", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Loktanella salsilacus", "strain": "strain=DSM 16199", "accession": "GCA_900114485.1", "taxid": 195913, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 76.9938, "matched_fragments": 256, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia litorea", "strain": "strain=DSM 29433", "accession": "GCA_900114675.1", "taxid": 1123755, "species_taxid": 1123755, "relation_to_type": "type", "validated": true, "ani": 76.9783, "matched_fragments": 195, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter ponti", "strain": "strain=DSM 100977", "accession": "GCA_003054285.1", "taxid": 1510457, "species_taxid": 1510457, "relation_to_type": "type", "validated": true, "ani": 76.9202, "matched_fragments": 218, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { 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