{
    "type": "genome",
    "identifier": "GCF_900114725.1",
    "organism": "Legionella jamestowniensis DSM 19215",
    "title": "Legionella jamestowniensis DSM 19215",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900114725.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02746073",
        "wgs_master": "FOTZ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1122163",
        "species_taxid": "455",
        "organism_name": "Legionella jamestowniensis DSM 19215",
        "infraspecific_name": "strain=DSM 19215",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/02",
        "asm_name": "IMG-taxon 2600255316 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900114725.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/114/725/GCF_900114725.1_IMG-taxon_2600255316_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3409712",
        "genome_size_ungapped": "3408907",
        "gc_percent": "39.500000",
        "replicon_count": "0",
        "scaffold_count": "15",
        "contig_count": "15",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900114725.1-RS_2024_04_27",
        "annotation_date": "2024-04-27",
        "total_gene_count": "3059",
        "protein_coding_gene_count": "2996",
        "non_coding_gene_count": "48",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-02",
    "dateModified": "2016-11-02",
    "datePublished": "2016-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Legionella jamestowniensis DSM 19215"
        ],
        "sample_taxid": [
            "1122163"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Jamestown, New York"
        ],
        "sample_host_location_id": [],
        "data_size": "0.970 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3409712",
        "Number of Sequences": "15",
        "Longest Sequences (bp)": "500036",
        "N50 (bp)": "400468",
        "Gap Ratio (%)": "0.023609",
        "GCcontent (%)": "39.4",
        "Number of CDSs": "3004",
        "Average Protein Length": "335.2",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Legionella jamestowniensis",
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                "accession": "GCA_900114725.1",
                "taxid": 455,
                "species_taxid": 455,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella jamestowniensis",
                "strain": "strain=JA-26-G1-E2",
                "accession": "GCA_001467745.1",
                "taxid": 455,
                "species_taxid": 455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9897,
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                "ani_threshold": 95,
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            },
            {
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                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella clemsonensis",
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                "taxid": 1867846,
                "species_taxid": 1867846,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0525,
                "matched_fragments": 802,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella hackeliae",
                "strain": "strain=ATCC35250",
                "accession": "GCA_000953655.1",
                "taxid": 449,
                "species_taxid": 449,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6772,
                "matched_fragments": 465,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella brunensis",
                "strain": "strain=ATCC 43878",
                "accession": "GCA_001467025.1",
                "taxid": 29422,
                "species_taxid": 29422,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 357,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella lytica",
                "strain": "strain=PCM 2298",
                "accession": "GCA_023921225.1",
                "taxid": 96232,
                "species_taxid": 96232,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.085,
                "matched_fragments": 93,
                "total_fragments": 1128,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella gresilensis",
                "strain": "strain=Greoux 11D13",
                "accession": "GCA_900639865.1",
                "taxid": 91823,
                "species_taxid": 91823,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 98,
                "total_fragments": 1128,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
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            {
                "accession": "GCF_001467745.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.71",
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                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_002240035.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000953655.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia",
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            },
            {
                "accession": "GCF_001467025.1",
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            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "jamestowniensis",
        "DSM",
        "19215"
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}