{ "type": "genome", "identifier": "GCF_900114775.1", "organism": "Marinobacter zhejiangensis", "title": "Marinobacter zhejiangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900114775.1", "bioproject": "PRJNA224116", "biosample": "SAMN04487963", "wgs_master": "FOUE00000000.1", "refseq_category": "reference genome", "taxid": "488535", "species_taxid": "488535", "organism_name": "Marinobacter zhejiangensis", "infraspecific_name": "strain=CGMCC 1.7061", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2617270916 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900114775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/114/775/GCF_900114775.1_IMG-taxon_2617270916_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4029256", "genome_size_ungapped": "4029246", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900114775.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3696", "protein_coding_gene_count": "3624", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter zhejiangensis" ], "sample_taxid": [ "488535" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.143 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4029256", "Number of Sequences": "12", "Longest Sequences (bp)": "1236377", "N50 (bp)": "990617", "Gap Ratio (%)": "0.000248", "GCcontent (%)": "57.7", "Number of CDSs": "3685", "Average Protein Length": "330.2", "Coding Ratio (%)": "90.6", "Number of rRNAs": "5", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter zhejiangensis", "strain": "strain=CGMCC 1.7061", "accession": "GCA_900114775.1", "taxid": 488535, 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407, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 78.5961, "matched_fragments": 398, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bohaiensis", "strain": "strain=T17", "accession": "GCA_003258515.1", "taxid": 2201898, "species_taxid": 2201898, "relation_to_type": "type", "validated": true, "ani": 78.5873, "matched_fragments": 349, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nitratireducens", "strain": "strain=AK21", "accession": "GCA_000708045.1", "taxid": 1137280, "species_taxid": 1137280, "relation_to_type": "type", "validated": true, "ani": 78.5742, "matched_fragments": 349, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 78.5362, "matched_fragments": 334, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=JCM 30472", "accession": "GCA_003007685.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 78.5125, "matched_fragments": 323, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter sediminum", "strain": "strain=R65", "accession": "GCA_016820575.1", "taxid": 256323, "species_taxid": 256323, "relation_to_type": "type", "validated": true, "ani": 78.51, "matched_fragments": 353, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900114775.1", "gtdb_species": "s__Marinobacter zhejiangensis", "ani": 100.0, "matched_fragments": 1336, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900106945.1", "gtdb_species": "s__Marinobacter mobilis", "ani": 81.0638, "matched_fragments": 794, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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