{ "type": "genome", "identifier": "GCF_900114875.1", "organism": "Chryseobacterium limigenitum", "title": "Chryseobacterium limigenitum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900114875.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216324", "wgs_master": "FPKW00000000.1", "refseq_category": "reference genome", "taxid": "1612149", "species_taxid": "1612149", "organism_name": "Chryseobacterium limigenitum", "infraspecific_name": "strain=SUR2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/27", "asm_name": "IMG-taxon 2654587896 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900114875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/114/875/GCF_900114875.1_IMG-taxon_2654587896_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4697725", "genome_size_ungapped": "4697725", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "60", "contig_count": "60", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900114875.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4347", "protein_coding_gene_count": "4250", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-27", "dateModified": "2016-11-27", "datePublished": "2016-11-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium limigenitum" ], "sample_taxid": [ "1612149" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Slovenia: Dogose, Maribor" ], "sample_host_location_id": [], "data_size": "1.313 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4697725", "Number of Sequences": "60", "Longest Sequences (bp)": "589666", "N50 (bp)": "193444", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.4", "Number of CDSs": "4182", "Average Protein Length": "322.1", "Coding Ratio (%)": "86.0", "Number of rRNAs": "4", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium limigenitum", "strain": "strain=SUR2", "accession": "GCA_900114875.1", "taxid": 1612149, "species_taxid": 1612149, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1533, "total_fragments": 1538, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium glaciei", "strain": "strain=IHBB 10212", "accession": "GCA_001648155.1", "taxid": 1685010, "species_taxid": 1685010, "relation_to_type": "type", "validated": true, "ani": 91.4232, "matched_fragments": 1158, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium polytrichastri", "strain": "strain=DSM 26899", "accession": "GCA_900142445.1", "taxid": 1302687, "species_taxid": 1302687, "relation_to_type": "type", "validated": true, "ani": 86.6468, "matched_fragments": 1037, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium soldanellicola", "strain": "strain=DSM 17072", "accession": "GCA_900100115.1", "taxid": 311333, "species_taxid": 311333, "relation_to_type": "type", "validated": true, "ani": 83.467, "matched_fragments": 928, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 83.142, "matched_fragments": 986, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium wanjuense", "strain": "strain=DSM 17724", "accession": "GCA_900111495.1", "taxid": 356305, "species_taxid": 356305, "relation_to_type": "type", "validated": true, "ani": 82.1715, "matched_fragments": 907, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 81.7507, "matched_fragments": 746, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 81.4253, "matched_fragments": 820, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium soli", "strain": "strain=DSM 19298", "accession": "GCA_000737705.1", "taxid": 445961, "species_taxid": 445961, "relation_to_type": "type", "validated": true, "ani": 81.2628, "matched_fragments": 869, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium luteum", "strain": "strain=DSM 18605", "accession": "GCA_000737785.1", "taxid": 421531, "species_taxid": 421531, "relation_to_type": "type", "validated": true, "ani": 81.0619, "matched_fragments": 732, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 80.8697, "matched_fragments": 752, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aquaticum subsp. greenlandense", "strain": "strain=UMB34", "accession": "GCA_001507325.1", "taxid": 345663, "species_taxid": 452084, "relation_to_type": "type", "validated": true, "ani": 80.5587, "matched_fragments": 713, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium jejuense", "strain": "strain=DSM 19299", "accession": "GCA_900100075.1", "taxid": 445960, "species_taxid": 445960, "relation_to_type": "type", "validated": true, "ani": 80.4649, "matched_fragments": 750, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium artocarpi", "strain": "strain=UTM-3", "accession": "GCA_001684975.1", "taxid": 1414727, "species_taxid": 1414727, "relation_to_type": "type", "validated": true, "ani": 80.3997, "matched_fragments": 754, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_019195395.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.2052, "matched_fragments": 181, "total_fragments": 1538, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900114875.1", "gtdb_species": "s__Chryseobacterium limigenitum", "ani": 100.0, "matched_fragments": 1533, "total_fragments": 1538, 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