{ "type": "genome", "identifier": "GCF_900114945.1", "organism": "Flavobacterium succinicans", "title": "Flavobacterium succinicans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900114945.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444143", "wgs_master": "FOUT00000000.1", "refseq_category": "reference genome", "taxid": "29536", "species_taxid": "29536", "organism_name": "Flavobacterium succinicans", "infraspecific_name": "strain=DSM 4002", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2693429891 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900114945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/114/945/GCF_900114945.1_IMG-taxon_2693429891_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3664904", "genome_size_ungapped": "3664610", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "52", "contig_count": "52", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900114945.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "3177", "protein_coding_gene_count": "3109", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium succinicans" ], "sample_taxid": [ "29536" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.027 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3664904", "Number of Sequences": "52", "Longest Sequences (bp)": "1012080", "N50 (bp)": "255203", "Gap Ratio (%)": "0.008022", "GCcontent (%)": "35.5", "Number of CDSs": "3097", "Average Protein Length": "340.6", "Coding Ratio (%)": "86.4", "Number of rRNAs": "2", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium succinicans", "strain": "strain=DSM 4002", "accession": "GCA_900114945.1", 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"matched_fragments": 298, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium erciyesense", "strain": "strain=F-328", "accession": "GCA_018069925.1", "taxid": 2825842, "species_taxid": 2825842, "relation_to_type": "type", "validated": true, "ani": 78.5872, "matched_fragments": 315, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hydatis", "strain": "strain=DSM 2063", "accession": "GCA_000737695.1", "taxid": 991, "species_taxid": 991, "relation_to_type": "type", "validated": true, "ani": 78.4749, "matched_fragments": 331, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daemonense", "strain": "strain=JCM 19455", "accession": "GCA_007341385.1", "taxid": 1393049, "species_taxid": 1393049, "relation_to_type": "type", "validated": true, "ani": 78.3236, "matched_fragments": 300, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium franklandianum", "strain": "strain=LB3P56", "accession": "GCA_007097365.1", "taxid": 2594430, "species_taxid": 2594430, "relation_to_type": "type", "validated": true, "ani": 78.2837, "matched_fragments": 316, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.2801, "matched_fragments": 292, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium seoulense", "strain": "strain=EM1321", "accession": "GCA_000695795.1", "taxid": 1492738, "species_taxid": 1492738, "relation_to_type": "type", "validated": true, "ani": 78.2692, "matched_fragments": 314, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 78.2645, "matched_fragments": 305, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_904425415.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 78.239, "matched_fragments": 332, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_902804475.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 78.2348, "matched_fragments": 323, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibisci", "strain": "strain=THG-HG1.4", "accession": "GCA_020026925.1", "taxid": 1914462, "species_taxid": 1914462, "relation_to_type": "type", "validated": true, "ani": 78.1747, "matched_fragments": 275, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.1722, "matched_fragments": 299, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium faecale", "strain": "strain=WV33", "accession": "GCA_003076455.1", "taxid": 1355330, "species_taxid": 1355330, "relation_to_type": "type", "validated": true, "ani": 78.1611, "matched_fragments": 286, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium geliluteum", "strain": "strain=P7388", "accession": "GCA_017948595.1", "taxid": 2816120, "species_taxid": 2816120, "relation_to_type": "type", "validated": true, "ani": 78.1424, "matched_fragments": 333, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium micromati", "strain": "strain=DSM 17659", "accession": "GCA_900129585.1", "taxid": 229205, "species_taxid": 229205, "relation_to_type": "type", "validated": true, "ani": 78.0969, "matched_fragments": 268, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.0068, "matched_fragments": 347, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium davisii", "strain": "strain=90-106", "accession": "GCA_019565505.1", "taxid": 2906077, "species_taxid": 2906077, "relation_to_type": "type", "validated": true, "ani": 77.3973, "matched_fragments": 117, "total_fragments": 1198, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000611675.1", "gtdb_species": "s__Flavobacterium succinicans", "ani": 99.9328, "matched_fragments": 1179, "total_fragments": 1198, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_902506345.1", "gtdb_species": "s__Flavobacterium sp902506345", "ani": 86.5943, "matched_fragments": 806, "total_fragments": 1198, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "succinicans" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }