{ "type": "genome", "identifier": "GCF_900115065.1", "organism": "Formivibrio citricus", "title": "Formivibrio citricus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900115065.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660284", "wgs_master": "FOVE00000000.1", "refseq_category": "reference genome", "taxid": "83765", "species_taxid": "83765", "organism_name": "Formivibrio citricus", "infraspecific_name": "strain=DSM 6150", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2599185172 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900115065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/115/065/GCF_900115065.1_IMG-taxon_2599185172_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3072471", "genome_size_ungapped": "3072471", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900115065.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "2863", "protein_coding_gene_count": "2765", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Formivibrio citricus" ], "sample_taxid": [ "83765" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Near Lake Kasumigaura, Ibaraki Pref., Japan" ], "sample_host_location_id": [], "data_size": "0.865 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3072471", "Number of Sequences": "44", "Longest Sequences (bp)": "287706", "N50 (bp)": "134956", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.8", "Number of CDSs": "2734", "Average Protein Length": "327.0", "Coding Ratio (%)": "87.3", "Number of rRNAs": "7", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Formivibrio citricus", "strain": "strain=DSM 6150", "accession": "GCA_900115065.1", "taxid": 83765, "species_taxid": 83765, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1000, "total_fragments": 1001, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chitiniphilus shinanonensis", "strain": "strain=DSM 23277", "accession": "GCA_000374805.1", "taxid": 553088, "species_taxid": 553088, "relation_to_type": "type", "validated": true, "ani": 78.4173, "matched_fragments": 309, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitiniphilus eburneus", "strain": "strain=HX-2-15", "accession": "GCA_005048205.1", "taxid": 2571148, "species_taxid": 2571148, "relation_to_type": "type", "validated": true, "ani": 78.3688, "matched_fragments": 272, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jeongeupia naejangsanensis", "strain": "strain=DSM 24253", "accession": "GCA_016865585.1", "taxid": 613195, "species_taxid": 613195, "relation_to_type": "type", "validated": true, "ani": 78.3562, "matched_fragments": 266, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jeongeupia chitinilytica", "strain": "strain=KCTC 23701", "accession": "GCA_014652315.1", "taxid": 1041641, "species_taxid": 1041641, "relation_to_type": "type", "validated": true, "ani": 78.2736, "matched_fragments": 279, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinilyticum litopenaei", "strain": "strain=DSM 21440", "accession": "GCA_000428145.1", "taxid": 1121276, "species_taxid": 1121276, "relation_to_type": "type", "validated": true, "ani": 78.1006, "matched_fragments": 300, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinilyticum aquatile", "strain": "strain=DSM 21506", "accession": "GCA_000430805.1", "taxid": 362520, "species_taxid": 362520, "relation_to_type": "type", 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"below_threshold" }, { "organism_name": "Paraburkholderia flava", "strain": "strain=LD6", "accession": "GCA_004359985.1", "taxid": 2547393, "species_taxid": 2547393, "relation_to_type": "type", "validated": true, "ani": 76.5556, "matched_fragments": 103, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia saeva", "strain": "strain=LMG 31841", "accession": "GCA_907164555.1", "taxid": 2777537, "species_taxid": 2777537, "relation_to_type": "type", "validated": true, "ani": 76.2155, "matched_fragments": 110, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900115065.1", "gtdb_species": "s__Formivibrio citricus", "ani": 100.0, "matched_fragments": 1000, "total_fragments": 1001, "gtdb_taxonomy": 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