{ "type": "genome", "identifier": "GCF_900115145.1", "organism": "Salegentibacter flavus", "title": "Salegentibacter flavus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900115145.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660413", "wgs_master": "FOVL00000000.1", "refseq_category": "reference genome", "taxid": "287099", "species_taxid": "287099", "organism_name": "Salegentibacter flavus", "infraspecific_name": "strain=DSM 17794", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2599185209 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900115145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/115/145/GCF_900115145.1_IMG-taxon_2599185209_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3688496", "genome_size_ungapped": "3684040", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "51", "contig_count": "51", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900115145.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3376", "protein_coding_gene_count": "3303", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Salegentibacter flavus" ], "sample_taxid": [ "287099" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.047 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3688496", "Number of Sequences": "51", "Longest Sequences (bp)": "449050", "N50 (bp)": "135016", "Gap Ratio (%)": "0.120808", "GCcontent (%)": "39.8", "Number of CDSs": "3219", "Average Protein Length": "335.5", "Coding Ratio (%)": "87.8", "Number of rRNAs": "2", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salegentibacter flavus", "strain": "strain=DSM 17794", "accession": "GCA_900115145.1", "taxid": 287099, "species_taxid": 287099, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1196, "total_fragments": 1201, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salegentibacter sediminis", "strain": "strain=K5023", "accession": "GCA_002078605.1", "taxid": 1930251, "species_taxid": 1930251, "relation_to_type": "type", "validated": true, "ani": 85.8905, "matched_fragments": 887, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter tibetensis", "strain": "strain=JZCK2", "accession": "GCA_020164485.1", "taxid": 2873600, "species_taxid": 2873600, "relation_to_type": "type", "validated": true, "ani": 79.3194, "matched_fragments": 437, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter lacus", "strain": "strain=LM13S", "accession": "GCA_020164555.1", "taxid": 2873599, "species_taxid": 2873599, "relation_to_type": "type", 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"matched_fragments": 366, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter salegens", "strain": "strain=DSM 5424", "accession": "GCA_003001895.1", "taxid": 143223, "species_taxid": 143223, "relation_to_type": "type", "validated": true, "ani": 78.476, "matched_fragments": 395, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter salegens", "strain": "strain=ACAM 48", "accession": "GCA_900142975.1", "taxid": 143223, "species_taxid": 143223, "relation_to_type": "type", "validated": true, "ani": 78.436, "matched_fragments": 404, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella forsetii", "strain": "strain=KT0803", "accession": "GCA_000060345.1", "taxid": 411153, "species_taxid": 411153, "relation_to_type": "type", "validated": true, "ani": 77.8763, "matched_fragments": 209, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella forsetii", "strain": "strain=CGMCC 1.15422", "accession": "GCA_014642775.1", "taxid": 411153, "species_taxid": 411153, "relation_to_type": "type", "validated": true, "ani": 77.814, "matched_fragments": 203, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella lutea", "strain": "strain=YJ019", "accession": "GCA_022489035.1", "taxid": 1607951, "species_taxid": 1607951, "relation_to_type": "type", "validated": true, "ani": 77.5423, "matched_fragments": 163, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zunongwangia profunda", "strain": "strain=SMA-87", "accession": "GCA_000023465.1", "taxid": 398743, "species_taxid": 398743, "relation_to_type": "type", "validated": true, "ani": 77.515, "matched_fragments": 182, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"accession": "GCA_022410465.1", "taxid": 2904124, "species_taxid": 2904124, "relation_to_type": "type", "validated": true, "ani": 77.2238, "matched_fragments": 203, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita lipolytica", "strain": "strain=Y10-2", "accession": "GCA_007997135.1", "taxid": 153267, "species_taxid": 153267, "relation_to_type": "type", "validated": true, "ani": 76.4839, "matched_fragments": 56, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Robertkochia sediminum", "strain": "strain=1368", "accession": "GCA_016786255.1", "taxid": 2785326, "species_taxid": 2785326, "relation_to_type": "type", "validated": true, "ani": 76.3657, "matched_fragments": 50, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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