{ "type": "genome", "identifier": "GCF_900115285.1", "organism": "Marinobacter daqiaonensis", "title": "Marinobacter daqiaonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900115285.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216203", "wgs_master": "FOYW00000000.1", "refseq_category": "na", "taxid": "650891", "species_taxid": "650891", "organism_name": "Marinobacter daqiaonensis", "infraspecific_name": "strain=CGMCC 1.9167", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2667527383 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900115285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/115/285/GCF_900115285.1_IMG-taxon_2667527383_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3933786", "genome_size_ungapped": "3930335", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900115285.1-RS_2025_01_07", "annotation_date": "2025-01-07", "total_gene_count": "3577", "protein_coding_gene_count": "3496", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter daqiaonensis" ], "sample_taxid": [ "650891" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.108 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3933786", "Number of Sequences": "8", "Longest Sequences (bp)": "2794580", "N50 (bp)": "2794580", "Gap Ratio (%)": "0.087727", "GCcontent (%)": "60.2", "Number of CDSs": "3542", "Average Protein Length": "330.7", "Coding Ratio (%)": "89.3", "Number of rRNAs": "2", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter daqiaonensis", "strain": "strain=CGMCC 1.9167", "accession": "GCA_900115285.1", "taxid": 650891, "species_taxid": 650891, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1307, "total_fragments": 1308, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter daqiaonensis", "strain": "strain=YCSA40", "accession": "GCA_012070355.1", "taxid": 650891, "species_taxid": 650891, "relation_to_type": "type", "validated": true, "ani": 99.9936, "matched_fragments": 1307, "total_fragments": 1308, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter segnicrescens", "strain": "strain=CGMCC 1.6489", "accession": "GCA_900111555.1", "taxid": 430453, "species_taxid": 430453, "relation_to_type": "type", "validated": true, "ani": 80.4397, "matched_fragments": 629, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 80.413, "matched_fragments": 650, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter zhanjiangensis", "strain": "strain=KCTC 22280", "accession": "GCA_014651935.1", "taxid": 578215, "species_taxid": 578215, "relation_to_type": "type", "validated": true, "ani": 80.4037, "matched_fragments": 734, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 79.2706, "matched_fragments": 432, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 78.7359, "matched_fragments": 392, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 78.7095, "matched_fragments": 367, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=IBRC-M 10445", "accession": "GCA_900114155.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 78.6506, "matched_fragments": 349, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter oulmenensis", "strain": "strain=DSM 22359", "accession": "GCA_014201735.1", "taxid": 643747, "species_taxid": 643747, "relation_to_type": "type", "validated": true, "ani": 78.6031, "matched_fragments": 366, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter denitrificans", "strain": "strain=JB02H27", "accession": "GCA_008795955.1", "taxid": 2597703, "species_taxid": 2597703, "relation_to_type": "type", "validated": true, "ani": 78.491, "matched_fragments": 404, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter guineae", "strain": "strain=M3B", "accession": "GCA_002744735.1", "taxid": 432303, "species_taxid": 432303, "relation_to_type": "type", "validated": true, "ani": 78.4794, "matched_fragments": 400, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 78.4396, "matched_fragments": 366, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.1821, "matched_fragments": 79, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900115285.1", "gtdb_species": "s__Marinobacter daqiaonensis", "ani": 100.0, "matched_fragments": 1307, "total_fragments": 1308, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900111555.1", "gtdb_species": "s__Marinobacter segnicrescens", "ani": 80.4681, "matched_fragments": 626, "total_fragments": 1308, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014651935.1", "gtdb_species": "s__Marinobacter zhanjiangensis", "ani": 80.404, "matched_fragments": 734, "total_fragments": 1308, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900114925.1", "gtdb_species": "s__Marinobacter pelagius", 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434, "total_fragments": 1308, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003994855.1", "gtdb_species": "s__Marinobacter sp003994855", "ani": 78.9115, "matched_fragments": 377, "total_fragments": 1308, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018623515.1", "gtdb_species": "s__Marinobacter sp018623515", "ani": 78.7978, "matched_fragments": 359, "total_fragments": 1308, 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"gc_content": 56.678, "coding_genes": 3548.15, "rRNA16S_genes": 2.444, "tRNA_genes": 48.833, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.96, "range_salinity": 1.0, "facultative_respiration": 0.137, "anaerobic_respiration": 0.034, "aerobic_respiration": 0.827, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.958, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.041, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacter", "daqiaonensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }