{
    "type": "genome",
    "identifier": "GCF_900115305.1",
    "organism": "Algoriphagus ornithinivorans",
    "title": "Algoriphagus ornithinivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900115305.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04488519",
        "wgs_master": "FOVW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "226506",
        "species_taxid": "226506",
        "organism_name": "Algoriphagus ornithinivorans",
        "infraspecific_name": "strain=DSM 15282",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/02",
        "asm_name": "IMG-taxon 2622736437 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900115305.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/115/305/GCF_900115305.1_IMG-taxon_2622736437_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4093442",
        "genome_size_ungapped": "4090085",
        "gc_percent": "39.500000",
        "replicon_count": "0",
        "scaffold_count": "23",
        "contig_count": "23",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900115305.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3563",
        "protein_coding_gene_count": "3503",
        "non_coding_gene_count": "43",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-02",
    "dateModified": "2016-11-02",
    "datePublished": "2016-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Algoriphagus ornithinivorans"
        ],
        "sample_taxid": [
            "226506"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.154 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4093442",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "505365",
        "N50 (bp)": "386296",
        "Gap Ratio (%)": "0.082009",
        "GCcontent (%)": "39.5",
        "Number of CDSs": "3439",
        "Average Protein Length": "349.8",
        "Coding Ratio (%)": "88.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Algoriphagus ornithinivorans",
                "strain": "strain=DSM 15282",
                "accession": "GCA_900115305.1",
                "taxid": 226506,
                "species_taxid": 226506,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1351,
                "total_fragments": 1352,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Algoriphagus algorifonticola",
                "strain": "strain=hg1",
                "accession": "GCA_007655305.1",
                "taxid": 2593007,
                "species_taxid": 2593007,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.5459,
                "matched_fragments": 1189,
                "total_fragments": 1352,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algoriphagus faecimaris",
                "strain": "strain=JCM 16561",
                "accession": "GCA_002150585.1",
                "taxid": 686796,
                "species_taxid": 686796,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4623,
                "matched_fragments": 355,
                "total_fragments": 1352,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algoriphagus zhangzhouensis",
                "strain": "strain=CGMCC 1.11027",
                "accession": "GCA_004366575.1",
                "taxid": 1073327,
                "species_taxid": 1073327,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4414,
                "matched_fragments": 421,
                "total_fragments": 1352,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algoriphagus zhangzhouensis",
                "strain": "strain=DSM 25035",
                "accession": "GCA_900148515.1",
                "taxid": 1073327,
                "species_taxid": 1073327,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4412,
                "matched_fragments": 415,
                "total_fragments": 1352,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algoriphagus vanfongensis",
                "strain": "strain=DSM 17529",
                "accession": "GCA_000429465.1",
                "taxid": 426371,
                "species_taxid": 426371,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4009,
                "matched_fragments": 339,
                "total_fragments": 1352,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algoriphagus kandeliae",
                "strain": "strain=XY-J91",
                "accession": "GCA_004571135.1",
                "taxid": 2562278,
                "species_taxid": 2562278,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7395,
                "matched_fragments": 348,
                "total_fragments": 1352,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algoriphagus boseongensis",
                "strain": "strain=CECT 8446",
                "accession": "GCA_004362805.1",
                "taxid": 1442587,
                "species_taxid": 1442587,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5991,
                "matched_fragments": 283,
                "total_fragments": 1352,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algoriphagus machipongonensis",
                "strain": "strain=PR1",
                "accession": "GCA_000166275.1",
                "taxid": 388413,
                "species_taxid": 388413,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.488,
                "matched_fragments": 245,
                "total_fragments": 1352,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algoriphagus yeomjeoni",
                "strain": "strain=DSM 23446",
                "accession": "GCA_003259505.1",
                "taxid": 291403,
                "species_taxid": 291403,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.387,
                "matched_fragments": 225,
                "total_fragments": 1352,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algoriphagus litoralis",
                "strain": "strain=DSL-12",
                "accession": "GCA_003259255.1",
                "taxid": 2202829,
                "species_taxid": 2202829,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3409,
                "matched_fragments": 208,
                "total_fragments": 1352,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900115305.1",
                "gtdb_species": "s__Algoriphagus ornithinivorans",
                "ani": 100.0,
                "matched_fragments": 1351,
                "total_fragments": 1352,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.91",
                "min_intra_species_ani": "95.63",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_007655305.1",
                "gtdb_species": "s__Algoriphagus sp007655305",
                "ani": 94.5459,
                "matched_fragments": 1189,
                "total_fragments": 1352,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900101705.1",
                "gtdb_species": "s__Algoriphagus faecimaris",
                "ani": 78.4501,
                "matched_fragments": 352,
                "total_fragments": 1352,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900148515.1",
                "gtdb_species": "s__Algoriphagus zhangzhouensis",
                "ani": 78.4374,
                "matched_fragments": 416,
                "total_fragments": 1352,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000429465.1",
                "gtdb_species": "s__Algoriphagus vanfongensis",
                "ani": 78.4009,
                "matched_fragments": 339,
                "total_fragments": 1352,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900113375.1",
                "gtdb_species": "s__Algoriphagus hitonicola",
                "ani": 78.1793,
                "matched_fragments": 348,
                "total_fragments": 1352,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013373335.1",
                "gtdb_species": "s__Algoriphagus sp013373335",
                "ani": 78.0141,
                "matched_fragments": 245,
                "total_fragments": 1352,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004571135.1",
                "gtdb_species": "s__Algoriphagus kandeliae",
                "ani": 77.7395,
                "matched_fragments": 348,
                "total_fragments": 1352,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004362805.1",
                "gtdb_species": "s__Algoriphagus boseongensis",
                "ani": 77.5991,
                "matched_fragments": 283,
                "total_fragments": 1352,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116615.1",
                "gtdb_species": "s__Algoriphagus locisalis",
                "ani": 77.5707,
                "matched_fragments": 203,
                "total_fragments": 1352,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000166275.1",
                "gtdb_species": "s__Algoriphagus machipongonensis",
                "ani": 77.4699,
                "matched_fragments": 244,
                "total_fragments": 1352,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003259505.1",
                "gtdb_species": "s__Algoriphagus yeomjeoni",
                "ani": 77.387,
                "matched_fragments": 225,
                "total_fragments": 1352,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007997215.1",
                "gtdb_species": "s__Algoriphagus aquimarinus_A",
                "ani": 77.2294,
                "matched_fragments": 228,
                "total_fragments": 1352,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": -0.097,
        "doubling_h": 0.69,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.5,
        "optimum_ph": 7.0,
        "genome_size": 4093442.0,
        "gc_content": 43.837,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Algoriphagus",
        "ornithinivorans"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}