{
    "type": "genome",
    "identifier": "GCF_900115315.1",
    "organism": "Capnocytophaga haemolytica",
    "title": "Capnocytophaga haemolytica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900115315.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05444369",
        "wgs_master": "FOVX00000000.1",
        "refseq_category": "na",
        "taxid": "45243",
        "species_taxid": "45243",
        "organism_name": "Capnocytophaga haemolytica",
        "infraspecific_name": "strain=DSM 11385",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/02",
        "asm_name": "IMG-taxon 2693429878 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900115315.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/115/315/GCF_900115315.1_IMG-taxon_2693429878_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2655673",
        "genome_size_ungapped": "2655673",
        "gc_percent": "44.500000",
        "replicon_count": "0",
        "scaffold_count": "39",
        "contig_count": "39",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900115315.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "2408",
        "protein_coding_gene_count": "2327",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-02",
    "dateModified": "2016-11-02",
    "datePublished": "2016-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Capnocytophaga haemolytica"
        ],
        "sample_taxid": [
            "45243"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.756 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2655673",
        "Number of Sequences": "39",
        "Longest Sequences (bp)": "347427",
        "N50 (bp)": "153291",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.3",
        "Number of CDSs": "2314",
        "Average Protein Length": "333.2",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Capnocytophaga haemolytica",
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                "accession": "GCA_900115315.1",
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                "species_taxid": 45243,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Capnocytophaga haemolytica",
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                "accession": "GCA_001553545.1",
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                "species_taxid": 45243,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.997,
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                "total_fragments": 864,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Capnocytophaga haemolytica",
                "strain": "strain=NCTC12947",
                "accession": "GCA_900187255.1",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Capnocytophaga ochracea",
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                "accession": "GCA_000023285.1",
                "taxid": 1018,
                "species_taxid": 1018,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9271,
                "matched_fragments": 149,
                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga ochracea",
                "strain": "strain=FDAARGOS_1468",
                "accession": "GCA_019930725.1",
                "taxid": 1018,
                "species_taxid": 1018,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8252,
                "matched_fragments": 152,
                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga periodontitidis",
                "strain": "strain=p1a2",
                "accession": "GCA_016126015.1",
                "taxid": 2795027,
                "species_taxid": 2795027,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5824,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga sputigena",
                "strain": "strain=NCTC11653",
                "accession": "GCA_900446695.1",
                "taxid": 1019,
                "species_taxid": 1019,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2812,
                "matched_fragments": 135,
                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_001553545.1",
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                "total_fragments": 864,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.34",
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                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_002209445.1",
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                "ani": 78.5784,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.66",
                "min_intra_species_ani": "96.51",
                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_900446695.1",
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                "ani": 78.2535,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "96.32",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_002999135.1",
                "gtdb_species": "s__Capnocytophaga sp002999135",
                "ani": 78.2382,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.388,
        "cell_length": 0.5,
        "doubling_h": null,
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        "coding_genes": 2239.667,
        "rRNA16S_genes": 4.0,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Capnocytophaga",
        "haemolytica"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}