{ "type": "genome", "identifier": "GCF_900115595.1", "organism": "Tranquillimonas alkanivorans", "title": "Tranquillimonas alkanivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900115595.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488047", "wgs_master": "FOXA00000000.1", "refseq_category": "reference genome", "taxid": "441119", "species_taxid": "441119", "organism_name": "Tranquillimonas alkanivorans", "infraspecific_name": "strain=DSM 19547", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2622736594 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900115595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/115/595/GCF_900115595.1_IMG-taxon_2622736594_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4543020", "genome_size_ungapped": "4541995", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "92", "contig_count": "92", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900115595.1-RS_2024_08_07", "annotation_date": "2024-08-07", "total_gene_count": "4536", "protein_coding_gene_count": "4396", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Tranquillimonas alkanivorans" ], "sample_taxid": [ "441119" ], 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"below_threshold" }, { "organism_name": "Limimaricola hongkongensis", "strain": "strain=UST950701-009P", "accession": "GCA_000365005.1", "taxid": 278132, "species_taxid": 278132, "relation_to_type": "type", "validated": true, "ani": 79.1106, "matched_fragments": 530, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola hongkongensis", "strain": "strain=DSM 17492", "accession": "GCA_000600975.2", "taxid": 278132, "species_taxid": 278132, "relation_to_type": "type", "validated": true, "ani": 79.0508, "matched_fragments": 537, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=JLT2016", "accession": "GCA_001969385.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 79.0062, "matched_fragments": 558, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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