{ "type": "genome", "identifier": "GCF_900115745.1", "organism": "Sphingomonas rubra", "title": "Sphingomonas rubra", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900115745.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488241", "wgs_master": "FOXP00000000.1", "refseq_category": "reference genome", "taxid": "634430", "species_taxid": "634430", "organism_name": "Sphingomonas rubra", "infraspecific_name": "strain=CGMCC 1.9113", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2617270762 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900115745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/115/745/GCF_900115745.1_IMG-taxon_2617270762_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3200202", "genome_size_ungapped": "3200202", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900115745.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3194", "protein_coding_gene_count": "3092", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas rubra" ], "sample_taxid": [ "634430" ], "sample_host_organism": 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2862498, "species_taxid": 2862498, "relation_to_type": "type", "validated": true, "ani": 80.5579, "matched_fragments": 590, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas pseudosanguinis", "strain": "strain=DSM 19512", "accession": "GCA_014196255.1", "taxid": 413712, "species_taxid": 413712, "relation_to_type": "type", "validated": true, "ani": 80.5484, "matched_fragments": 579, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas endophytica", "strain": "strain=DSM 101535", "accession": "GCA_014199415.1", "taxid": 869719, "species_taxid": 869719, "relation_to_type": "type", "validated": true, "ani": 80.5138, "matched_fragments": 581, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas gellani", "strain": "strain=S6-262", "accession": "GCA_900110035.1", "taxid": 1166340, "species_taxid": 1166340, 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