{
    "type": "genome",
    "identifier": "GCF_900116065.1",
    "organism": "Brevundimonas viscosa",
    "title": "Brevundimonas viscosa",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900116065.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05192570",
        "wgs_master": "FOZV00000000.1",
        "refseq_category": "reference genome",
        "taxid": "871741",
        "species_taxid": "871741",
        "organism_name": "Brevundimonas viscosa",
        "infraspecific_name": "strain=CGMCC 1.10683",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/02",
        "asm_name": "IMG-taxon 2671180176 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900116065.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/116/065/GCF_900116065.1_IMG-taxon_2671180176_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2996830",
        "genome_size_ungapped": "2996830",
        "gc_percent": "70.500000",
        "replicon_count": "0",
        "scaffold_count": "19",
        "contig_count": "19",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900116065.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "3154",
        "protein_coding_gene_count": "3082",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-02",
    "dateModified": "2016-11-02",
    "datePublished": "2016-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brevundimonas viscosa"
        ],
        "sample_taxid": [
            "871741"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.807 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2996830",
        "Number of Sequences": "19",
        "Longest Sequences (bp)": "808211",
        "N50 (bp)": "371485",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.4",
        "Number of CDSs": "3108",
        "Average Protein Length": "293.7",
        "Coding Ratio (%)": "91.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Brevundimonas viscosa",
                "strain": "strain=CGMCC 1.10683",
                "accession": "GCA_900116065.1",
                "taxid": 871741,
                "species_taxid": 871741,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 988,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brevundimonas lenta",
                "strain": "strain=DSM 23960",
                "accession": "GCA_014196335.1",
                "taxid": 424796,
                "species_taxid": 424796,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2851,
                "matched_fragments": 742,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas basaltis",
                "strain": "strain=DSM 25335",
                "accession": "GCA_014202075.1",
                "taxid": 472166,
                "species_taxid": 472166,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1005,
                "matched_fragments": 692,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas alba",
                "strain": "strain=DSM 4736",
                "accession": "GCA_011927945.1",
                "taxid": 74314,
                "species_taxid": 74314,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8275,
                "matched_fragments": 718,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas fluminis",
                "strain": "strain=LA-55",
                "accession": "GCA_003934285.1",
                "taxid": 2487274,
                "species_taxid": 2487274,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1904,
                "matched_fragments": 604,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas albigilva",
                "strain": "strain=KEME 9005-016",
                "accession": "GCA_023503965.1",
                "taxid": 1312364,
                "species_taxid": 1312364,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0232,
                "matched_fragments": 620,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas diminuta",
                "strain": "strain=ATCC 11568",
                "accession": "GCA_000204035.1",
                "taxid": 293,
                "species_taxid": 293,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6651,
                "matched_fragments": 578,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas diminuta",
                "strain": "strain=NCTC8545",
                "accession": "GCA_900445995.1",
                "taxid": 293,
                "species_taxid": 293,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6424,
                "matched_fragments": 590,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas guildfordensis",
                "strain": "strain=Sa3CVA3",
                "accession": "GCA_014836405.1",
                "taxid": 2762241,
                "species_taxid": 2762241,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5464,
                "matched_fragments": 557,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas aurantiaca",
                "strain": "strain=DSM 4731",
                "accession": "GCA_014199955.1",
                "taxid": 74316,
                "species_taxid": 74316,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9907,
                "matched_fragments": 572,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas nasdae",
                "strain": "strain=JCM 11415",
                "accession": "GCA_016654005.1",
                "taxid": 172043,
                "species_taxid": 172043,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4337,
                "matched_fragments": 561,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas vitisensis",
                "strain": "strain=GR-TSA-9",
                "accession": "GCA_016656965.1",
                "taxid": 2800818,
                "species_taxid": 2800818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0363,
                "matched_fragments": 524,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas pishanensis",
                "strain": "strain=CHPC 1.3453",
                "accession": "GCA_022750635.1",
                "taxid": 2896315,
                "species_taxid": 2896315,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5449,
                "matched_fragments": 344,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phenylobacterium aquaticum",
                "strain": "strain=KACC 18306",
                "accession": "GCA_022695515.1",
                "taxid": 1763816,
                "species_taxid": 1763816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3558,
                "matched_fragments": 407,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium sophorae",
                "strain": "strain=CCBAU 03386",
                "accession": "GCA_013087515.1",
                "taxid": 1535242,
                "species_taxid": 1535242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2437,
                "matched_fragments": 134,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium laguerreae",
                "strain": "strain=FB206",
                "accession": "GCA_002008165.1",
                "taxid": 1076926,
                "species_taxid": 1076926,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2002,
                "matched_fragments": 130,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cereibacter azotoformans",
                "strain": "strain=KA25",
                "accession": "GCA_003050905.1",
                "taxid": 43057,
                "species_taxid": 43057,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.153,
                "matched_fragments": 174,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pararhodobacter aggregans",
                "strain": "strain=DSM 18938",
                "accession": "GCA_003054005.1",
                "taxid": 404875,
                "species_taxid": 404875,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9824,
                "matched_fragments": 169,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pararhodobacter aggregans",
                "strain": "strain=D1-19",
                "accession": "GCA_003075525.1",
                "taxid": 404875,
                "species_taxid": 404875,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9661,
                "matched_fragments": 168,
                "total_fragments": 988,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900116065.1",
                "gtdb_species": "s__Brevundimonas viscosa",
                "ani": 100.0,
                "matched_fragments": 988,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001794825.1",
                "gtdb_species": "s__Brevundimonas sp001794825",
                "ani": 91.037,
                "matched_fragments": 824,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013912005.1",
                "gtdb_species": "s__Brevundimonas sp013912005",
                "ani": 88.575,
                "matched_fragments": 782,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015234495.1",
                "gtdb_species": "s__Brevundimonas sp015234495",
                "ani": 85.1656,
                "matched_fragments": 458,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016183935.1",
                "gtdb_species": "s__Brevundimonas sp016183935",
                "ani": 84.7295,
                "matched_fragments": 671,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014196335.1",
                "gtdb_species": "s__Brevundimonas lenta",
                "ani": 84.2721,
                "matched_fragments": 743,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014202075.1",
                "gtdb_species": "s__Brevundimonas basaltis",
                "ani": 84.125,
                "matched_fragments": 690,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001425945.1",
                "gtdb_species": "s__Brevundimonas sp001425945",
                "ani": 84.1079,
                "matched_fragments": 716,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001427825.1",
                "gtdb_species": "s__Brevundimonas sp001427825",
                "ani": 83.9498,
                "matched_fragments": 700,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011927945.1",
                "gtdb_species": "s__Brevundimonas alba",
                "ani": 83.812,
                "matched_fragments": 719,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002483305.1",
                "gtdb_species": "s__Brevundimonas sp002483305",
                "ani": 83.6386,
                "matched_fragments": 660,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000204035.1",
                "gtdb_species": "s__Brevundimonas diminuta",
                "ani": 81.6737,
                "matched_fragments": 577,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.62",
                "min_intra_species_ani": "95.74",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_001424025.1",
                "gtdb_species": "s__Brevundimonas sp001424025",
                "ani": 81.5285,
                "matched_fragments": 600,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000421705.1",
                "gtdb_species": "s__Brevundimonas naejangsanensis",
                "ani": 81.1041,
                "matched_fragments": 568,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.43",
                "min_intra_species_ani": "97.43",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_015999335.1",
                "gtdb_species": "s__Tabrizicola soli",
                "ani": 76.1764,
                "matched_fragments": 176,
                "total_fragments": 988,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tabrizicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.204,
        "doubling_h": null,
        "growth_tmp": 28.681,
        "optimum_tmp": 29.0,
        "optimum_ph": 7.5,
        "genome_size": 2996830.0,
        "gc_content": 67.057,
        "coding_genes": 3106.166,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Brevundimonas",
        "viscosa"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}