{ "type": "genome", "identifier": "GCF_900116115.1", "organism": "Lutibacter maritimus", "title": "Lutibacter maritimus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900116115.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488006", "wgs_master": "FOZP00000000.1", "refseq_category": "reference genome", "taxid": "593133", "species_taxid": "593133", "organism_name": "Lutibacter maritimus", "infraspecific_name": "strain=DSM 24450", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2622736611 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900116115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/116/115/GCF_900116115.1_IMG-taxon_2622736611_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3484703", "genome_size_ungapped": "3479823", "gc_percent": "29.500000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900116115.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3124", "protein_coding_gene_count": "3065", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Lutibacter maritimus" ], "sample_taxid": [ "593133" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.949 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3484703", "Number of Sequences": "20", "Longest Sequences (bp)": "709263", "N50 (bp)": "358088", "Gap Ratio (%)": "0.140041", "GCcontent (%)": "29.5", "Number of CDSs": "3055", "Average Protein Length": "345.0", "Coding Ratio (%)": "90.7", "Number of rRNAs": "6", "Number of tRNAs": "41", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lutibacter maritimus", "strain": "strain=DSM 24450", "accession": "GCA_900116115.1", "taxid": 593133, "species_taxid": 593133, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1151, "total_fragments": 1152, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lutibacter oceani", "strain": "strain=JCM30924", "accession": "GCA_003426875.1", "taxid": 1853311, "species_taxid": 1853311, "relation_to_type": "type", "validated": true, "ani": 80.3728, "matched_fragments": 651, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oceani", "strain": "strain=325-5", "accession": "GCA_003384935.1", "taxid": 1853311, "species_taxid": 1853311, "relation_to_type": "type", "validated": true, "ani": 80.2977, "matched_fragments": 650, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter flavus", "strain": "strain=DSM 27993", "accession": "GCA_900188355.1", "taxid": 691689, "species_taxid": 691689, "relation_to_type": "type", "validated": true, 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1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter profundi", "strain": "strain=LP1", "accession": "GCA_001543325.1", "taxid": 1622118, "species_taxid": 1622118, "relation_to_type": "type", "validated": true, "ani": 78.7798, "matched_fragments": 484, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 77.4103, "matched_fragments": 259, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 77.1691, "matched_fragments": 242, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 77.1415, "matched_fragments": 253, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 77.054, "matched_fragments": 247, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 76.9534, "matched_fragments": 250, "total_fragments": 1152, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter gangjinensis", 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1152, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003384935.1", "gtdb_species": "s__Lutibacter oceani", "ani": 80.2997, "matched_fragments": 648, "total_fragments": 1152, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018054895.1", "gtdb_species": "s__Lutibacter sp018054895", "ani": 80.1715, "matched_fragments": 488, "total_fragments": 1152, "gtdb_taxonomy": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lutibacter", "maritimus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }