{ "tc_result": [ { "organism_name": "Hyphomicrobium facile", "strain": "strain=DSM 1565", "accession": "GCA_900116175.1", "taxid": 51670, "species_taxid": 51670, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1473, "total_fragments": 1473, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hyphomicrobium denitrificans", "strain": "strain=ATCC 51888", "accession": "GCA_000143145.1", "taxid": 53399, "species_taxid": 53399, "relation_to_type": "type", "validated": true, "ani": 79.697, "matched_fragments": 527, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium album", "strain": "strain=XQ2", "accession": "GCA_009708035.1", "taxid": 2665159, "species_taxid": 2665159, "relation_to_type": "type", "validated": true, "ani": 77.7552, "matched_fragments": 259, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium nitrativorans", "strain": "strain=NL23", "accession": "GCA_000503895.1", "taxid": 1427356, "species_taxid": 1427356, "relation_to_type": "type", "validated": true, "ani": 77.7471, "matched_fragments": 218, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium zavarzinii", "strain": "strain=ZV-622", "accession": "GCA_000383415.1", "taxid": 48292, "species_taxid": 48292, "relation_to_type": "type", "validated": true, "ani": 77.4738, "matched_fragments": 256, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium sulfonivorans", "strain": "strain=S1", "accession": "GCA_016125985.1", "taxid": 121290, "species_taxid": 121290, "relation_to_type": "type", "validated": true, "ani": 77.1385, "matched_fragments": 201, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium sulfonivorans", "strain": "strain=S1", "accession": "GCA_013306565.1", "taxid": 121290, "species_taxid": 121290, "relation_to_type": "type", "validated": true, "ani": 77.0979, "matched_fragments": 200, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya koreensis", "strain": "strain=Jip08", "accession": "GCA_023016525.1", "taxid": 266121, "species_taxid": 266121, "relation_to_type": "type", "validated": true, "ani": 76.9435, "matched_fragments": 136, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium zhangyense", "strain": "strain=CGMCC 1.15528", "accession": "GCA_011045115.1", "taxid": 1776730, "species_taxid": 1776730, "relation_to_type": "type", "validated": true, "ani": 76.8789, "matched_fragments": 114, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya novella", "strain": "strain=DSM 506", "accession": "GCA_000092925.1", "taxid": 921, "species_taxid": 921, "relation_to_type": "type", "validated": true, "ani": 76.8562, "matched_fragments": 132, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium carmichaelinearum", "strain": "strain=ICMP 18942", "accession": "GCA_900199455.1", "taxid": 1208188, "species_taxid": 1208188, "relation_to_type": "type", "validated": true, "ani": 76.8165, "matched_fragments": 132, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella sumterensis", "strain": "strain=MEC087", "accession": "GCA_004514425.2", "taxid": 1967501, "species_taxid": 1967501, "relation_to_type": "type", "validated": true, "ani": 76.7542, "matched_fragments": 120, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium indicum", "strain": "strain=JKLM 12A2", "accession": "GCA_005862305.2", "taxid": 2583231, "species_taxid": 2583231, "relation_to_type": "type", "validated": true, "ani": 76.708, "matched_fragments": 124, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gregans", "strain": "strain=NBRC 103626", "accession": "GCA_022179245.1", "taxid": 374424, "species_taxid": 374424, "relation_to_type": "type", "validated": true, "ani": 76.6574, "matched_fragments": 110, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia hirudinis", "strain": "strain=DSM 25966", "accession": "GCA_014196455.1", "taxid": 1293440, "species_taxid": 1293440, "relation_to_type": "type", "validated": true, "ani": 76.6325, "matched_fragments": 143, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia adipata", "strain": "strain=DSM 17808", "accession": "GCA_000423225.1", "taxid": 166954, "species_taxid": 166954, "relation_to_type": "type", "validated": true, "ani": 76.6013, "matched_fragments": 145, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium cerastii", "strain": "strain=DSM 23679", "accession": "GCA_022179125.1", "taxid": 932741, "species_taxid": 932741, "relation_to_type": "type", "validated": true, "ani": 76.5926, "matched_fragments": 122, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopseudomonas faecalis", "strain": "strain=JCM 11668", "accession": "GCA_003217325.1", "taxid": 99655, "species_taxid": 99655, "relation_to_type": "type", "validated": true, "ani": 76.5053, "matched_fragments": 124, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 76.3907, "matched_fragments": 149, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900116175.1", "gtdb_species": "s__Hyphomicrobium facile", "ani": 100.0, "matched_fragments": 1472, "total_fragments": 1473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000384335.2", "gtdb_species": "s__Hyphomicrobium sp000384335", "ani": 84.9008, "matched_fragments": 1074, "total_fragments": 1473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003987725.1", "gtdb_species": "s__Hyphomicrobium sp003987725", "ani": 84.1893, "matched_fragments": 1028, "total_fragments": 1473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.09", "min_intra_species_ani": "98.09", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018242295.1", "gtdb_species": "s__Hyphomicrobium sp018242295", "ani": 83.9801, "matched_fragments": 1007, "total_fragments": 1473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.15", "min_intra_species_ani": "97.15", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000253295.1", "gtdb_species": "s__Hyphomicrobium sp000253295", "ani": 80.087, "matched_fragments": 686, "total_fragments": 1473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "99.46", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018242215.1", "gtdb_species": "s__Hyphomicrobium sp018242215", "ani": 79.9149, "matched_fragments": 620, "total_fragments": 1473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003987855.1", "gtdb_species": "s__Hyphomicrobium sp003987855", "ani": 79.3349, "matched_fragments": 568, "total_fragments": 1473, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Hyphomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }