{
    "type": "genome",
    "identifier": "GCF_900116205.1",
    "organism": "Halostagnicola kamekurae",
    "title": "Halostagnicola kamekurae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900116205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04488556",
        "wgs_master": "FOZS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "619731",
        "species_taxid": "619731",
        "organism_name": "Halostagnicola kamekurae",
        "infraspecific_name": "strain=DSM 22427",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/02",
        "asm_name": "IMG-taxon 2639762563 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900116205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/116/205/GCF_900116205.1_IMG-taxon_2639762563_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4108147",
        "genome_size_ungapped": "4108147",
        "gc_percent": "61.500000",
        "replicon_count": "0",
        "scaffold_count": "16",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900116205.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "4167",
        "protein_coding_gene_count": "3935",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-02",
    "dateModified": "2016-11-02",
    "datePublished": "2016-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halostagnicola kamekurae"
        ],
        "sample_taxid": [
            "619731"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.140 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4108147",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "1498774",
        "N50 (bp)": "1202185",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.5",
        "Number of CDSs": "4028",
        "Average Protein Length": "278.3",
        "Coding Ratio (%)": "81.9",
        "Number of rRNAs": "4",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Halostagnicola kamekurae",
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                "relation_to_type": "type",
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            },
            {
                "organism_name": "Halostagnicola larsenii",
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                "species_taxid": 353800,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Haloterrigena alkaliphila",
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                "accession": "GCA_017352155.2",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "validated": true,
                "ani": 79.9098,
                "matched_fragments": 599,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema amylolyticum",
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                "accession": "GCA_020515625.1",
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                "ani": 79.8827,
                "matched_fragments": 625,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halopiger salifodinae",
                "strain": "strain=CGMCC 1.12284",
                "accession": "GCA_900110455.1",
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                "species_taxid": 1202768,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Halopiger salifodinae",
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                "species_taxid": 1202768,
                "relation_to_type": "type",
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                "ani": 79.773,
                "matched_fragments": 602,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema salaciae",
                "strain": "strain=DSM 25055",
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                "species_taxid": 1186196,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            }
        ],
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_900116205.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000691505.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_000517625.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_013456555.1",
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            },
            {
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Halostagnicola",
        "kamekurae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}