{ "type": "genome", "identifier": "GCF_900116255.1", "organism": "Halolactibacillus miurensis", "title": "Halolactibacillus miurensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900116255.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421668", "wgs_master": "FPAI00000000.1", "refseq_category": "na", "taxid": "306541", "species_taxid": "306541", "organism_name": "Halolactibacillus miurensis", "infraspecific_name": "strain=DSM 17074", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2675903221 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900116255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/116/255/GCF_900116255.1_IMG-taxon_2675903221_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3168606", "genome_size_ungapped": "3168311", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900116255.1-RS_2024_08_11", "annotation_date": "2024-08-11", "total_gene_count": "3083", "protein_coding_gene_count": "2976", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Halolactibacillus miurensis" ], "sample_taxid": [ "306541" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Oura beach, Miura Peninsula, Kanagawa Prefecture" ], "sample_host_location_id": [], "data_size": "0.902 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3168606", "Number of Sequences": "63", "Longest Sequences (bp)": "407613", "N50 (bp)": "108050", "Gap Ratio (%)": "0.009310", "GCcontent (%)": "39.1", "Number of CDSs": "3015", "Average Protein Length": "304.1", "Coding Ratio (%)": "86.8", "Number of rRNAs": "5", "Number of tRNAs": "57", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halolactibacillus miurensis", "strain": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Halolactibacillus", "miurensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }