{ "type": "genome", "identifier": "GCF_900116285.1", "organism": "Sulfitobacter marinus", "title": "Sulfitobacter marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900116285.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488040", "wgs_master": "FPAJ00000000.1", "refseq_category": "reference genome", "taxid": "394264", "species_taxid": "394264", "organism_name": "Sulfitobacter marinus", "infraspecific_name": "strain=DSM 23422", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2619619641 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900116285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/116/285/GCF_900116285.1_IMG-taxon_2619619641_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3567424", "genome_size_ungapped": "3567424", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900116285.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3501", "protein_coding_gene_count": "3428", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfitobacter marinus" ], "sample_taxid": [ "394264" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.008 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3567424", "Number of Sequences": "12", "Longest Sequences (bp)": "1107134", "N50 (bp)": "713200", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.9", "Number of CDSs": "3473", "Average Protein Length": "309.4", "Coding Ratio (%)": "90.4", "Number of rRNAs": "9", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfitobacter marinus", "strain": "strain=DSM 23422", "accession": "GCA_900116285.1", "taxid": 394264, 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"validated": true, "ani": 78.2161, "matched_fragments": 420, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter donghicola", "strain": "strain=KCTC 12864", "accession": "GCA_000622405.1", "taxid": 421000, "species_taxid": 421000, "relation_to_type": "type", "validated": true, "ani": 78.0352, "matched_fragments": 305, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter donghicola", "strain": "strain=JCM 14565", "accession": "GCA_000712275.1", "taxid": 421000, "species_taxid": 421000, "relation_to_type": "type", "validated": true, "ani": 77.9089, "matched_fragments": 310, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 77.7949, "matched_fragments": 363, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=HEL-45", "accession": "GCA_000172095.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 77.7756, "matched_fragments": 360, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter dubius", "strain": "strain=DSM 16472", "accession": "GCA_900113435.1", "taxid": 218673, "species_taxid": 218673, "relation_to_type": "type", "validated": true, "ani": 77.7462, "matched_fragments": 389, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.7091, "matched_fragments": 404, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.6615, "matched_fragments": 408, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dinoroseobacter shibae", "strain": "strain=DFL 12", "accession": "GCA_000018145.1", "taxid": 215813, "species_taxid": 215813, "relation_to_type": "type", "validated": true, "ani": 76.7988, "matched_fragments": 132, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 76.6656, "matched_fragments": 155, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus tegillarcae", "strain": "strain=BM15", "accession": "GCA_002847305.1", "taxid": 1529068, "species_taxid": 1529068, "relation_to_type": "type", "validated": true, "ani": 76.6104, "matched_fragments": 127, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 76.5586, "matched_fragments": 141, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 76.5586, "matched_fragments": 141, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 76.2188, "matched_fragments": 143, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aestuarii", "strain": "strain=DSM 19484", "accession": "GCA_003594815.1", "taxid": 453842, "species_taxid": 453842, "relation_to_type": "type", "validated": true, "ani": 76.1889, "matched_fragments": 116, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900116285.1", "gtdb_species": "s__Sulfitobacter marinus", "ani": 100.0, "matched_fragments": 1181, "total_fragments": 1182, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, 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