{ "type": "genome", "identifier": "GCF_900116365.1", "organism": "Zhouia amylolytica", "title": "Zhouia amylolytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900116365.1", "bioproject": "PRJNA224116", "biosample": "SAMN04487906", "wgs_master": "FPAG00000000.1", "refseq_category": "na", "taxid": "376730", "species_taxid": "376730", "organism_name": "Zhouia amylolytica", "infraspecific_name": "strain=CGMCC 1.6114", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2619618939 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900116365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/116/365/GCF_900116365.1_IMG-taxon_2619618939_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3892267", "genome_size_ungapped": "3888955", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900116365.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3345", "protein_coding_gene_count": "3279", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Zhouia amylolytica" ], "sample_taxid": [ "376730" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.099 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3892267", "Number of Sequences": "17", "Longest Sequences (bp)": "600677", "N50 (bp)": "403541", "Gap Ratio (%)": "0.085092", "GCcontent (%)": "36.7", "Number of CDSs": "3255", "Average Protein Length": "354.4", "Coding Ratio (%)": "88.9", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Zhouia amylolytica", "strain": "strain=CGMCC 1.6114", "accession": "GCA_900116365.1", "taxid": 376730, "species_taxid": 376730, 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2559571, "species_taxid": 2559571, "relation_to_type": "type", "validated": true, "ani": 76.3324, "matched_fragments": 75, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter caenipelagi", "strain": "strain=CECT 8455", "accession": "GCA_004364175.1", "taxid": 1447781, "species_taxid": 1447781, "relation_to_type": "type", "validated": true, "ani": 76.3281, "matched_fragments": 71, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 76.3241, "matched_fragments": 72, "total_fragments": 1288, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina latercula", "strain": "strain=DSM 2041", "accession": "GCA_000430645.1", "taxid": 987, "species_taxid": 987, "relation_to_type": "type", 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