{ "type": "genome", "identifier": "GCF_900116415.1", "organism": "Chryseobacterium formosense", "title": "Chryseobacterium formosense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900116415.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421857", "wgs_master": "FPAP00000000.1", "refseq_category": "reference genome", "taxid": "236814", "species_taxid": "236814", "organism_name": "Chryseobacterium formosense", "infraspecific_name": "strain=DSM 17452", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2684622901 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900116415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/116/415/GCF_900116415.1_IMG-taxon_2684622901_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4432606", "genome_size_ungapped": "4432606", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900116415.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4054", "protein_coding_gene_count": "3958", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium formosense" ], "sample_taxid": [ "236814" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.232 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4432606", "Number of Sequences": "14", "Longest Sequences (bp)": "1319397", "N50 (bp)": "1176890", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.8", "Number of CDSs": "3944", "Average Protein Length": "325.2", "Coding Ratio (%)": "86.8", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium formosense", "strain": "strain=DSM 17452", "accession": "GCA_900116415.1", 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"validated": true, "ani": 83.2355, "matched_fragments": 925, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium arachidis", "strain": "strain=DSM 27619", "accession": "GCA_900129245.1", "taxid": 1416778, "species_taxid": 1416778, "relation_to_type": "type", "validated": true, "ani": 81.5986, "matched_fragments": 819, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 81.2637, "matched_fragments": 676, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 81.2056, "matched_fragments": 822, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium limigenitum", "strain": "strain=SUR2", "accession": "GCA_900114875.1", "taxid": 1612149, "species_taxid": 1612149, "relation_to_type": "type", "validated": true, "ani": 81.0863, "matched_fragments": 734, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aquaticum subsp. greenlandense", "strain": "strain=UMB34", "accession": "GCA_001507325.1", "taxid": 345663, "species_taxid": 452084, "relation_to_type": "type", "validated": true, "ani": 81.0774, "matched_fragments": 771, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.8978, "matched_fragments": 744, 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95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 78.9037, "matched_fragments": 463, "total_fragments": 1471, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900116415.1", "gtdb_species": "s__Chryseobacterium formosense", "ani": 100.0, "matched_fragments": 1471, "total_fragments": 1471, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "97.50", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.80", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_000799515.1", 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