{
    "type": "genome",
    "identifier": "GCF_900116445.1",
    "organism": "Paraburkholderia aspalathi",
    "title": "Paraburkholderia aspalathi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900116445.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05192563",
        "wgs_master": "FPBH00000000.1",
        "refseq_category": "na",
        "taxid": "1324617",
        "species_taxid": "1324617",
        "organism_name": "Paraburkholderia aspalathi",
        "infraspecific_name": "strain=LMG 27731",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/05",
        "asm_name": "IMG-taxon 2671180117 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900116445.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/116/445/GCF_900116445.1_IMG-taxon_2671180117_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9892286",
        "genome_size_ungapped": "9892147",
        "gc_percent": "61.000000",
        "replicon_count": "0",
        "scaffold_count": "103",
        "contig_count": "103",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900116445.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "8891",
        "protein_coding_gene_count": "8663",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-05",
    "dateModified": "2016-11-05",
    "datePublished": "2016-11-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paraburkholderia aspalathi"
        ],
        "sample_taxid": [
            "1324617"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.778 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9892286",
        "Number of Sequences": "103",
        "Longest Sequences (bp)": "588940",
        "N50 (bp)": "216058",
        "Gap Ratio (%)": "0.001405",
        "GCcontent (%)": "61.1",
        "Number of CDSs": "8838",
        "Average Protein Length": "315.3",
        "Coding Ratio (%)": "84.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paraburkholderia aspalathi",
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                "species_taxid": 1324617,
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                "validated": true,
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                "matched_fragments": 3241,
                "total_fragments": 3245,
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                "status": "inconclusive"
            },
            {
                "organism_name": "Paraburkholderia nemoris",
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                "taxid": 2793076,
                "species_taxid": 2793076,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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                "status": "below_threshold"
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            {
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia polaris",
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                "species_taxid": 2728848,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.7411,
                "matched_fragments": 2077,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia elongata",
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                "accession": "GCA_013177735.1",
                "taxid": 2675747,
                "species_taxid": 2675747,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.718,
                "matched_fragments": 1970,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia domus",
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                "accession": "GCA_905220705.1",
                "taxid": 2793075,
                "species_taxid": 2793075,
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                "status": "below_threshold"
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            {
                "organism_name": "Paraburkholderia solitsugae",
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            },
            {
                "organism_name": "Paraburkholderia haematera",
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                "species_taxid": 2793077,
                "relation_to_type": "type",
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                "ani": 90.2069,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia kirstenboschensis",
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                "accession": "GCA_001636975.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia podalyriae",
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                "accession": "GCA_014397785.1",
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                "matched_fragments": 1470,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_900116445.1",
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                "matched_fragments": 3241,
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                "mean_intra_species_ani": "N/A",
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            {
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    "_bac2feature": {
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    "_genome_taxon": [
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        "aspalathi"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}